PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01021397001
Common NameVITISV_042733
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 320aa    MW: 35000.9 Da    PI: 7.2999
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01021397001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.75.5e-34181238259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK vk+s+fprsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+
  GSVIVT01021397001 181 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCTVKKRVERSFQDPSTVITTYEGQHNHQ 238
                        8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-35165240IPR003657WRKY domain
SuperFamilySSF1182901.44E-29172240IPR003657WRKY domain
PROSITE profilePS5081132.179175240IPR003657WRKY domain
SMARTSM007741.4E-39180239IPR003657WRKY domain
PfamPF031062.9E-26181238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSDEPRDLYY HDPFHDDRHG IIGNTGFSFS AINDSKADSS MRAAPSPPNL QGFDPPYMSF  60
TDCLNGSLDY NSLTTAFGLS PSSSEAFSPV EGNHKPVANL GDLGASGEIA GTPNSSISSS  120
STEAGAEEDS SKSKKDRQAK VSELDGGDGS KKVNKPKKKA EKRQREPRFA FMTKSEVDHL  180
EDGYRWRKYG QKAVKNSPFP RSYYRCTTQK CTVKKRVERS FQDPSTVITT YEGQHNHQIP  240
VTLRGNAGGM LPPSVLTPGQ MGGPGFPQEL FFQMASPMNN LSAAGSFYPQ GLTPFQQLQF  300
HDYGLLQDVV PSMIHKQEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-29170240777Probable WRKY transcription factor 4
2lex_A7e-29170240777Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0090110.0KT009011.1 Vitis vinifera WRKY8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272089.10.0PREDICTED: probable WRKY transcription factor 71
TrEMBLA0A438JP420.0A0A438JP42_VITVI; Putative WRKY transcription factor 28
TrEMBLA5BVH30.0A5BVH3_VITVI; Uncharacterized protein
TrEMBLD7TK050.0D7TK05_VITVI; WRKY8
STRINGVIT_10s0003g02810.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.18e-63WRKY DNA-binding protein 28