PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01021303001
Common NameVIT_10s0003g02070
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26194.5 Da    PI: 9.8596
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01021303001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.51.3e-31958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  GSVIVT01021303001  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 58
                       79***********************************************8 PP
2K-box117.11.6e-38771735100
              K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                        s++  ++ea+a+ +qqe++kL ++i+nLq+++Rh+lGe+L+sL++k+L++Le +Lek++++iRs+Knell+++ie++qk+e +l+++n++Lr
  GSVIVT01021303001  77 SNTGsVSEANAQFYQQESSKLHQQIRNLQNSNRHMLGESLGSLNFKDLKSLEIRLEKGISRIRSRKNELLFAEIEYMQKREIDLHNDNQYLR 168
                        344459************************************************************************************** PP

              K-box  96 kklee 100
                        ++++e
  GSVIVT01021303001 169 ARIAE 173
                        *9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.132161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-42160IPR002100Transcription factor, MADS-box
CDDcd002655.95E-46278No hitNo description
SuperFamilySSF554551.44E-33275IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-33323IPR002100Transcription factor, MADS-box
PfamPF003198.0E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-333859IPR002100Transcription factor, MADS-box
PfamPF014866.7E-2985171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.49687177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN  60
SVKSTIERYK KASADSSNTG SVSEANAQFY QQESSKLHQQ IRNLQNSNRH MLGESLGSLN  120
FKDLKSLEIR LEKGISRIRS RKNELLFAEI EYMQKREIDL HNDNQYLRAR IAENERNEQQ  180
MSLMPGGANY ELMPSQQFDS RNYFQLNGLQ PNQSYSRQDQ PALQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-21173173Myocyte-specific enhancer factor 2B
1tqe_Q1e-21173173Myocyte-specific enhancer factor 2B
1tqe_R1e-21173173Myocyte-specific enhancer factor 2B
1tqe_S1e-21173173Myocyte-specific enhancer factor 2B
6c9l_A1e-21173173Myocyte-specific enhancer factor 2B
6c9l_B1e-21173173Myocyte-specific enhancer factor 2B
6c9l_C1e-21173173Myocyte-specific enhancer factor 2B
6c9l_D1e-21173173Myocyte-specific enhancer factor 2B
6c9l_E1e-21173173Myocyte-specific enhancer factor 2B
6c9l_F1e-21173173Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.79570.0bud| flower| fruit| inflorescence| pedicel
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flower. Preferentially expressed in stamen and carpel and weakly in petal. Undetected in leaves and roots.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2093340.0EF209334.1 Vitis labrusca x Vitis vinifera AGAMOUS-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268097.11e-165agamous
SwissprotQ408721e-135AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLD7TJT81e-164D7TJT8_VITVI; Uncharacterized protein
STRINGVIT_10s0003g02070.t011e-165(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-126MIKC_MADS family protein