PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01021252001

Common Name

LOC100244564, VIT_10s0003g01600

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

WRKY

Protein Properties

Length: 279aa MW: 30939.3 Da PI: 4.8828

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01021252001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.4	3.8e-30	77	135	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+ GSVIVT01021252001 77 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTMLVVTYSCEHNHP 135 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.2E-31	70	137	IPR003657	WRKY domain
PROSITE profile	PS50811	32.294	71	137	IPR003657	WRKY domain
SuperFamily	SSF118290	1.16E-25	73	137	IPR003657	WRKY domain
SMART	SM00774	3.6E-35	76	136	IPR003657	WRKY domain
Pfam	PF03106	1.0E-25	78	135	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MDGRFNSNPF VSEQEEQENS PENSGDSPPS PMFNDAKISS STSSPKRSRR AMQKRVVSVP 60 IKDVEGSRVK GDCAPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSRVD 120 PTMLVVTYSC EHNHPWPASR NHHNTTNPPT TAAATPTPTS APATPPSPKP AIFSSQAEPD 180 PDEKFTDLGE ESLITTEDFT WFSDFESPSS TMLESPIFAE NNVRDADVAM FFPMREEDES 240 LFADLGELPE CSLVFRRGVL EMEEERRRCT VPMCGTTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-21	54	137	6	79	Disease resistance protein RRS1
5w3x_D	2e-21	54	137	6	79	Disease resistance protein RRS1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.9725	0.0	cell culture\| flower\| fruit\| inflorescence\| leaf\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ390774	0.0	FQ390774.1 Vitis vinifera clone SS0AEB16YL11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002269267.1	0.0	PREDICTED: probable WRKY transcription factor 65
Swissprot	Q9LP56	1e-84	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	D7TJP4	0.0	D7TJP4_VITVI; Uncharacterized protein
STRING	VIT_10s0003g01600.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	9e-77	WRKY DNA-binding protein 65

Link Out ? help Back to Top
Phytozome	GSVIVT01021252001
Entrez Gene	100244564

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]