PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01021225001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 429aa    MW: 49132.5 Da    PI: 8.6211
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01021225001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.21.4e-3184137255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        prlrWtp+LH +Fv+ave+LGG+ +AtPk +lelm+vkgL+++hvkSHLQ+YR+
  GSVIVT01021225001  84 PRLRWTPDLHLSFVHAVERLGGQARATPKLVLELMNVKGLSIAHVKSHLQMYRS 137
                        8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-3080138IPR009057Homeodomain-like
PROSITE profilePS5129411.23680140IPR017930Myb domain
SuperFamilySSF466893.23E-1482138IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-2284138IPR006447Myb domain, plants
PfamPF002491.2E-885136IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MTERLFIHEE KNDGSKQEET ENTSFDLNEE SNSPEDDAAA EAEVSMEDDE GEREGSSANN  60
NNVSAGEKRR GKNSVRQYVR SKMPRLRWTP DLHLSFVHAV ERLGGQARAT PKLVLELMNV  120
KGLSIAHVKS HLQMYRSKRL DESGQVLCKT YRRMGGRDRD RDCSPGILFR PTGSCRHFSM  180
EKSGMEQAWN PGECSRSYNL LRCTLSQQQY DFRANSSRRQ QYASSQYYNA LRLSTSALQS  240
KQYFGQGNGP TRPSRFLEEK KWPPRELIGN PWREKTRTNA ASQSLVHQIC TTPRCVGATL  300
TYSKKPSEWS PANEERLGQF QSHLHYPKTI SSISTPQIEP PFRLESNQEK RLKEEEWLPD  360
LQLRLSQRSA NEEDTHHKSK YEMNTMLSLS PYSSRQQEQP TEKQKEETQT NAWPSQTTTG  420
KADLSLSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-1685139357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1685139357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1685139357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1685139357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4234361e-180AM423436.2 Vitis vinifera contig VV78X035624.19, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010655530.10.0PREDICTED: uncharacterized protein LOC104880489 isoform X3
RefseqXP_019078026.10.0PREDICTED: uncharacterized protein LOC104880489 isoform X1
TrEMBLA0A438HH660.0A0A438HH66_VITVI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.14e-36G2-like family protein