PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01021098001 | ||||||||
Common Name | VIT_10s0003g00140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 228aa MW: 24589.4 Da PI: 10.03 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3.1e-20 | 20 | 70 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAaka++ a+++++g+ GSVIVT01021098001 20 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDSAAREFRGA 70 69*******.**********8...557*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.05E-21 | 20 | 78 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.525 | 20 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-32 | 20 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.08E-30 | 20 | 77 | No hit | No description |
SMART | SM00380 | 1.3E-38 | 20 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-13 | 20 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-11 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-11 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016604 | Cellular Component | nuclear body | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAPKEKVAGV KPSANAKEVH FRGVRKRPWG RYAAEIRDPG KKSRVWLGTF DTAEEAAKAY 60 DSAAREFRGA KAKTNFPLVS ENLNNNNQSP SQSSTVESSS REGFSPALMV DSSPLDLNLL 120 HGGGVGHHQF QVSSPSPAAG IVPTGGLPAA NHLFYFDAML RTGRVNQDFQ RLRFDRAASD 180 FRAALTGGVQ SDSDSSSVVD LNHNDLKPRA RVLIDLDLNR PPPPEIA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-22 | 16 | 78 | 1 | 64 | ATERF1 |
3gcc_A | 4e-22 | 16 | 78 | 1 | 64 | ATERF1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.581 | 0.0 | bud| flower| fruit| inflorescence| pedicel| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, mostly in root tip, lateral root tips, cortex and vascular tissues. {ECO:0000269|PubMed:10945353}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00358 | DAP | Transfer from AT3G15210 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY395744 | 0.0 | AY395744.1 Vitis aestivalis putative ethylene response factor ERF3a mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002279692.1 | 1e-137 | PREDICTED: ethylene-responsive transcription factor 4 | ||||
Swissprot | Q9LW49 | 2e-45 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | D7TJC7 | 1e-164 | D7TJC7_VITVI; Uncharacterized protein | ||||
STRING | VIT_10s0003g00140.t01 | 1e-165 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-27 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01021098001 |