PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01021087001 | ||||||||
Common Name | LOC100250271, VIT_10s0003g00050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | SBP | ||||||||
Protein Properties | Length: 141aa MW: 15724.5 Da PI: 8.1499 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 138.4 | 2.1e-43 | 56 | 132 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv++C+ad+seak+yh+rh+vCe+h+kapv+l++g++qrfCqqCsrfhelsefD++krsCrrrLa+hnerrrk+++ GSVIVT01021087001 56 CQVDNCTADMSEAKRYHKRHRVCEHHAKAPVILIAGIQQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSS 132 **************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF037575 | 1.2E-62 | 1 | 140 | IPR017238 | Squamosa promoter-binding protein |
Gene3D | G3DSA:4.10.1100.10 | 2.0E-36 | 48 | 117 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.582 | 53 | 130 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.22E-40 | 54 | 133 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.0E-34 | 56 | 129 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MEMSKAQGKR TLMEEEEEDD EDTVGLGFGE DEKKKKAVTL TNKKGSGGAG STPPSCQVDN 60 CTADMSEAKR YHKRHRVCEH HAKAPVILIA GIQQRFCQQC SRFHELSEFD DTKRSCRRRL 120 AGHNERRRKS SSESHGEGSS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-38 | 47 | 129 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00290 | DAP | Transfer from AT2G33810 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM456675 | 1e-169 | AM456675.2 Vitis vinifera contig VV78X102566.12, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002280052.1 | 1e-100 | PREDICTED: squamosa promoter-binding protein 1 isoform X2 | ||||
Swissprot | Q38741 | 2e-52 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | D7TJB9 | 1e-98 | D7TJB9_VITVI; Squamosa promoter-binding-like protein | ||||
STRING | VIT_10s0003g00050.t01 | 2e-99 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 3e-42 | squamosa promoter binding protein-like 3 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01021087001 |
Entrez Gene | 100250271 |
Publications ? help Back to Top | |||
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