PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01021072001

Common Name

VIT_05s0029g00060

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

G2-like

Protein Properties

Length: 226aa MW: 24789.2 Da PI: 6.6235

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01021072001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.7	1.5e-34	41	95	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl GSVIVT01021072001 41 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 95 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.095	38	98	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-33	38	96	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.06E-17	40	98	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-24	41	96	IPR006447	Myb domain, plants
Pfam	PF00249	5.6E-9	43	94	IPR001005	SANT/Myb domain
Pfam	PF14379	5.7E-28	136	182	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MYSAIHSLPL DGGVAHADFQ GSLDGTNLPG DACLVLTTDP KPRLRWTAEL HERFVDAVTQ 60 LGGPDKATPK TIMRTMGVKG LTLYHLKSHL QKYRLGKQSC KELTDNSSCI AESQDTGSSS 120 TSSSRMIPQD LNDGYQVTEA LRVQMEVQRR LHEQLEVQRH LQLRIEAQGK YLQSILEKAC 180 KALKDQAAAT AGLEAAREEL SELQIKVSND CEGMNPLETI KMPSA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-20	41	97	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-20	41	97	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-20	41	97	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-20	41	97	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-20	41	97	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-20	41	97	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-20	41	97	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-20	41	97	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-20	41	97	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-20	41	97	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-20	41	97	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-20	41	97	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.3202	0.0	flower\| fruit\| inflorescence\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ392577	0.0	FQ392577.1 Vitis vinifera clone SS0AFA5YC01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010650358.1	1e-164	PREDICTED: protein PHR1-LIKE 2 isoform X2
Swissprot	Q94A57	1e-127	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	F6GWG5	1e-164	F6GWG5_VITVI; Uncharacterized protein
STRING	VIT_05s0029g00060.t01	1e-165	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-115	G2-like family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01021072001

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]