PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01020855001

Common Name

LOC104880844, VIT_12s0028g00370

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

Nin-like

Protein Properties

Length: 292aa MW: 31405.2 Da PI: 9.0978

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01020855001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	74.1	1.7e-23	10	59	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 k++s++d+s++Fslpi +AA+ Lgvc++vLK+iCR++G++RWP+Rk +s GSVIVT01020855001 10 DKSLSFDDVSNCFSLPISEAANALGVCTSVLKKICRENGLQRWPYRKFQS 59 589********************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.96	1	79	IPR003035	RWP-RK domain
Pfam	PF02042	3.1E-21	13	59	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MMSKSSQGSD KSLSFDDVSN CFSLPISEAA NALGVCTSVL KKICRENGLQ RWPYRKFQSG 60 TSVEEIKKYA ARERNKELAQ LSKVDVQGND ALTSSAVSAA FGSQPQNDTK SSLWKMSKLH 120 GAIPPHMLQQ QGSRNIQNGR PQNLPNASLS KGIAASLDEF KYGFPTSGLA TASNKWWGSS 180 SPDGYEGTIG NGVEIDEEDK KQSEQLADNG ANLLVMDGEK AENEKEEGTI GPQGTGLLTA 240 VRKTTVEEGR KILKIGVGRD HGVLKAGKKE RRLLLQIFGS SLPSQWINGS S*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.29952	0.0	fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM429969	0.0	AM429969.2 Vitis vinifera contig VV78X151036.4, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010657121.1	0.0	PREDICTED: protein NLP3 isoform X1
TrEMBL	E0CU37	0.0	E0CU37_VITVI; Uncharacterized protein
STRING	VIT_12s0028g00370.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP8668	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	3e-10	NIN like protein 7

Link Out ? help Back to Top
Phytozome	GSVIVT01020855001
Entrez Gene	104880844