PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01020609001
Common NameLOC100267787, VIT_12s0028g03050
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 304aa    MW: 34457.8 Da    PI: 8.6499
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01020609001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.92.4e-33602001128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 
                        lp+G++F+Ptd+el+ e+L  kv+ ++++l+        +++   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+++     
  GSVIVT01020609001  60 LPAGVKFDPTDQELL-EHLDGKVRCDDHKLHPlidefipTLEGEnGICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVStdsdg 149
                        799************.99*****99995553333333222333336**********.555555677******************73334555 PP

                NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                         + +W++tgk+++v++ +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  GSVIVT01020609001 150 gETRWHKTGKTRPVFV-GGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 200
                        5778************.9*************6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3853219IPR003441NAC domain
PROSITE profilePS5100533.47860219IPR003441NAC domain
PfamPF023651.4E-1561200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTWCNDCDNS RMIEGSSPPS TDNSTVIAEK PKDTATRTCP SCGHQIKLQE QARIHDLPGL  60
PAGVKFDPTD QELLEHLDGK VRCDDHKLHP LIDEFIPTLE GENGICYTHP EKLPGVSKDG  120
LIRHFFHRPS KAYTTGTRKR RKVSTDSDGG ETRWHKTGKT RPVFVGGKVK GYKKILVLYT  180
NYGKQRKPEK TNWVMHQYHL GNNEEEKDGE LVVSKVFYQT QPRQCSSIMK DSLPSKLKDH  240
HSGHESPNLR NNALVEYYNP NSFISFDQGS QNRLSHARLI PNFTVHDGST FLLENVKEHM  300
GRQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4252920.0AM425292.2 Vitis vinifera contig VV78X015037.17, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275319.10.0PREDICTED: NAC domain-containing protein 73
SwissprotO494591e-125NAC73_ARATH; NAC domain-containing protein 73
TrEMBLE0CTJ00.0E0CTJ0_VITVI; Uncharacterized protein
STRINGVIT_12s0028g03050.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-119NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]