PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01020478001
Common NameVIT_19s0027g00230
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 296aa    MW: 33364.1 Da    PI: 6.767
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01020478001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.78.1e-5261291128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhP+deel+++yL kkv++++ +l   + evd++k+ePwd+p+++  ++k+wyf+ +rd+kyatg r+nrat sgyWkatgkd+++
  GSVIVT01020478001   6 LPPGFRFHPKDEELICDYLMKKVTSSESSL---FIEVDLNKCEPWDIPEMACVGSKDWYFYNQRDRKYATGLRTNRATLSGYWKATGKDRPI 94 
                        79************************9777...679************76667899************************************ PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ls kg+lvg++ktLvfy+grapkg+ktdWvmhe+rl
  GSVIVT01020478001  95 LS-KGTLVGMRKTLVFYQGRAPKGKKTDWVMHEFRL 129
                        **.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-583153IPR003441NAC domain
PROSITE profilePS5100556.0566153IPR003441NAC domain
PfamPF023651.8E-267129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MVESRLPPGF RFHPKDEELI CDYLMKKVTS SESSLFIEVD LNKCEPWDIP EMACVGSKDW  60
YFYNQRDRKY ATGLRTNRAT LSGYWKATGK DRPILSKGTL VGMRKTLVFY QGRAPKGKKT  120
DWVMHEFRLQ GPLTPPAIPS LKEDWVLCRV FNKSRSEAAG KAITSNMGNG YYDNMNMGSS  180
TLPPLVDSYI NFDQTEIKLN EYEQVPCFSD MCSPNPSNLV FPHITHLEPH LLTKTIAPIF  240
GGMPDLGTFS CDKMVIKTVL NQLSNVEESP SFGEGSSSES YLSEVALPPI WNHYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-51215411169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.23520.0bud| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4761300.0AM476130.2 Vitis vinifera contig VV78X009230.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271458.10.0PREDICTED: NAC domain-containing protein 21/22
SwissprotQ84TE61e-105NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A438DNK60.0A0A438DNK6_VITVI; NAC domain-containing protein 21/22
STRINGVIT_19s0027g00230.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.23e-97NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]