PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01020388001 | ||||||||
Common Name | LOC100262877, VIT_19s0027g00870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | NAC | ||||||||
Protein Properties | Length: 278aa MW: 32287.3 Da PI: 7.8995 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.3 | 4.3e-51 | 12 | 140 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrFhPtdeelv++yL++k+e+k++++ e ik++diyk++PwdLpk+ + ++kewyfF+kr +ky+++ r+nr+t sg+Wkatg dk+++ GSVIVT01020388001 12 LPGFRFHPTDEELVSFYLRRKIEKKPISF-ELIKQTDIYKYDPWDLPKNSSVTDKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPIY 102 69**************************9.99***************8888899************************************** PP NAM 94 skkgel...vglkktLvfykgrapkgektdWvmheyrl 128 s +g++ +glkk+Lv+y+g+a kg+ktdW+mhe+rl GSVIVT01020388001 103 SVQGRAhdcIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 140 *95555566***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-55 | 7 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.147 | 11 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-26 | 13 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025242 | anatomy | infructescence axis | ||||
PO:0007017 | developmental stage | sporophyte senescent stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MDATMDDEQV VLPGFRFHPT DEELVSFYLR RKIEKKPISF ELIKQTDIYK YDPWDLPKNS 60 SVTDKEWYFF CKRGRKYRNS IRPNRVTGSG FWKATGIDKP IYSVQGRAHD CIGLKKSLVY 120 YRGSAGKGTK TDWMMHEFRL PADQKNTTPH SATAADEEVE IWTLCRIFKR NVSYRKSTPD 180 WRETSAKRKP TNSRPKTGNM DSENWEGYIS FGAPEALDNE KKLFVGHNMN ERNQFHVVSE 240 PESCSSVLSD EAREFLVHGN WDEIVPAMDC AFDPYYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-48 | 13 | 176 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-48 | 13 | 176 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-48 | 13 | 176 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-48 | 13 | 176 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-48 | 13 | 176 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-48 | 13 | 176 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM448624 | 0.0 | AM448624.2 Vitis vinifera contig VV78X194156.2, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002265838.2 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 2e-84 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A438I9N2 | 0.0 | A0A438I9N2_VITVI; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | D7SWV5 | 0.0 | D7SWV5_VITVI; Uncharacterized protein | ||||
STRING | VIT_19s0027g00870.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 7e-87 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01020388001 |
Entrez Gene | 100262877 |