PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01020388001
Common NameLOC100262877, VIT_19s0027g00870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 278aa    MW: 32287.3 Da    PI: 7.8995
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01020388001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.34.3e-51121402128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                         pGfrFhPtdeelv++yL++k+e+k++++ e ik++diyk++PwdLpk+ + ++kewyfF+kr +ky+++ r+nr+t sg+Wkatg dk+++
  GSVIVT01020388001  12 LPGFRFHPTDEELVSFYLRRKIEKKPISF-ELIKQTDIYKYDPWDLPKNSSVTDKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPIY 102
                        69**************************9.99***************8888899************************************** PP

                NAM  94 skkgel...vglkktLvfykgrapkgektdWvmheyrl 128
                        s +g++   +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  GSVIVT01020388001 103 SVQGRAhdcIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 140
                        *95555566***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-557170IPR003441NAC domain
PROSITE profilePS5100554.14711170IPR003441NAC domain
PfamPF023656.1E-2613140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025242anatomyinfructescence axis
PO:0007017developmental stagesporophyte senescent stage
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDATMDDEQV VLPGFRFHPT DEELVSFYLR RKIEKKPISF ELIKQTDIYK YDPWDLPKNS  60
SVTDKEWYFF CKRGRKYRNS IRPNRVTGSG FWKATGIDKP IYSVQGRAHD CIGLKKSLVY  120
YRGSAGKGTK TDWMMHEFRL PADQKNTTPH SATAADEEVE IWTLCRIFKR NVSYRKSTPD  180
WRETSAKRKP TNSRPKTGNM DSENWEGYIS FGAPEALDNE KKLFVGHNMN ERNQFHVVSE  240
PESCSSVLSD EAREFLVHGN WDEIVPAMDC AFDPYYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-481317619171NO APICAL MERISTEM PROTEIN
1ut4_B1e-481317619171NO APICAL MERISTEM PROTEIN
1ut7_A1e-481317619171NO APICAL MERISTEM PROTEIN
1ut7_B1e-481317619171NO APICAL MERISTEM PROTEIN
4dul_A1e-481317619171NAC domain-containing protein 19
4dul_B1e-481317619171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4486240.0AM448624.2 Vitis vinifera contig VV78X194156.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002265838.20.0PREDICTED: transcription factor JUNGBRUNNEN 1
SwissprotQ9SK552e-84NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A438I9N20.0A0A438I9N2_VITVI; Transcription factor JUNGBRUNNEN 1
TrEMBLD7SWV50.0D7SWV5_VITVI; Uncharacterized protein
STRINGVIT_19s0027g00870.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.17e-87NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]