PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01020387001

Common Name

VIT_19s0027g00880

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

NAC

Protein Properties

Length: 215aa MW: 25648.6 Da PI: 10.3268

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01020387001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.7	5.6e-50	13	141	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrFhPtdeelv++yL++k+e++ ++l e+ik++diyk++PwdL ++ + ++kewyfF+kr +ky+++ r+nr+t sg+Wkatg dk+++ GSVIVT01020387001 13 PGFRFHPTDEELVSFYLRRKIEKQLISL-EFIKQIDIYKYDPWDLAkNNNTVTDKEWYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPIY 103 9***********************99.99**********8444455889*********************************** PP NAM 94 skkgel...vglkktLvfykgrapkgektdWvmheyrl 128 s++g+ +glkk+Lv+y+g+a kg+kt+W+mhe+rl GSVIVT01020387001 104 SAEGQGhgcIGLKKSLVYYRGSAGKGTKTEWMMHEFRL 141 84443455**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	49.826	11	162	IPR003441	NAC domain
SuperFamily	SSF101941	1.31E-51	12	153	IPR003441	NAC domain
Pfam	PF02365	2.1E-26	13	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025242	anatomy	infructescence axis
PO:0007017	developmental stage	sporophyte senescent stage

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSSTDTVKDD DLPGFRFHPT DEELVSFYLR RKIEKQLISL EFIKQIDIYK YDPWDLAKNN 60 NTVTDKEWYF FCKRGRKYRN SVRPNRVTGS GFWKATGIDK PIYSAEGQGH GCIGLKKSLV 120 YYRGSAGKGT KTEWMMHEFR LPADQKNAQA ADEEVIIRWY TIFIFVELHK IDRRGKRRKK 180 VKKEKKKNHI HISIFFVFFS WEFFFFFRFF FLSA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-46	1	160	9	166	NAC domain-containing protein 19
3swm_B	2e-46	1	160	9	166	NAC domain-containing protein 19
3swm_C	2e-46	1	160	9	166	NAC domain-containing protein 19
3swm_D	2e-46	1	160	9	166	NAC domain-containing protein 19
3swp_A	2e-46	1	160	9	166	NAC domain-containing protein 19
3swp_B	2e-46	1	160	9	166	NAC domain-containing protein 19
3swp_C	2e-46	1	160	9	166	NAC domain-containing protein 19
3swp_D	2e-46	1	160	9	166	NAC domain-containing protein 19
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	183	RRKKVKKE

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269\|PubMed:22345491}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM489253	1e-163	AM489253.1 Vitis vinifera contig VV78X073977.2, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002265799.1	1e-113	PREDICTED: transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	2e-71	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	D7SWV4	1e-157	D7SWV4_VITVI; Uncharacterized protein
STRING	VIT_19s0027g00880.t01	1e-157	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	8e-74	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	GSVIVT01020387001

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]