PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01020384001
Common NameVIT_19s0027g00910
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 296aa    MW: 33681 Da    PI: 8.1248
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01020384001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.83.8e-48111431128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        l pGfrFhPtdeelv++yL kk+e+k + + e ik++diyk++PwdL  ++ + ++kewyfF++r +ky+++ r+nr+t sg+Wkatg dk+
  GSVIVT01020384001  11 LLPGFRFHPTDEELVSFYLLKKIEKKLTAI-ELIKQIDIYKYDPWDLAkNSRTVTDKEWYFFCRRGRKYRNSVRPNRVTGSGFWKATGIDKP 101
                        579**********************99888.89**************8334445889*********************************** PP

                NAM  92 vlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++s      +g  +glkk+Lv+y g+a kg+ktdW+mhe+rl
  GSVIVT01020384001 102 IYSVeeghsRGDCIGLKKSLVYYCGSAGKGTKTDWMMHEFRL 143
                        **98766655566***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-5210173IPR003441NAC domain
PROSITE profilePS5100552.86911173IPR003441NAC domain
PfamPF023653.2E-2513143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDADKEDDQF LLPGFRFHPT DEELVSFYLL KKIEKKLTAI ELIKQIDIYK YDPWDLAKNS  60
RTVTDKEWYF FCRRGRKYRN SVRPNRVTGS GFWKATGIDK PIYSVEEGHS RGDCIGLKKS  120
LVYYCGSAGK GTKTDWMMHE FRLPADQKNA TLPTAKAADQ EAEVWTLCRI FKRNVPHRRY  180
TPDWREVPAK RNPTNSKPET CDMSPENWEG YVSSGAPVSL HKGKKPVGSH IDEGNPLPAG  240
QVSSIVQGSQ PESCSSSILS NDAREFFAHG NWDEIVSFME LSFDPSSINN FKIMH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-461117417166NO APICAL MERISTEM PROTEIN
1ut4_B3e-461117417166NO APICAL MERISTEM PROTEIN
1ut7_A3e-461117417166NO APICAL MERISTEM PROTEIN
1ut7_B3e-461117417166NO APICAL MERISTEM PROTEIN
3swm_A3e-461117420169NAC domain-containing protein 19
3swm_B3e-461117420169NAC domain-containing protein 19
3swm_C3e-461117420169NAC domain-containing protein 19
3swm_D3e-461117420169NAC domain-containing protein 19
3swp_A3e-461117420169NAC domain-containing protein 19
3swp_B3e-461117420169NAC domain-containing protein 19
3swp_C3e-461117420169NAC domain-containing protein 19
3swp_D3e-461117420169NAC domain-containing protein 19
4dul_A3e-461117417166NAC domain-containing protein 19
4dul_B3e-461117417166NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4838690.0AM483869.1 Vitis vinifera contig VV78X073995.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002265591.30.0PREDICTED: transcription factor JUNGBRUNNEN 1
SwissprotQ9SK551e-80NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLD7SWV20.0D7SWV2_VITVI; Uncharacterized protein
STRINGVIT_19s0027g00910.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.15e-83NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]