PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01020353001 | ||||||||
Common Name | LOC100252484, VIT_19s0027g01120, VITISV_026098 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | LBD | ||||||||
Protein Properties | Length: 171aa MW: 18763.2 Da PI: 7.4609 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 147.9 | 2.6e-46 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l++ GSVIVT01020353001 13 PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQT 104 7******************************************************************************************* PP DUF260 93 elallkee 100 +lal+++e GSVIVT01020353001 105 QLALVQAE 112 ****9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.352 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-45 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MKESGRKQGA VSPCAACKLL RRRCAQDCVF APYFPADEPH KFASVHKVFG ASNVNKMLQE 60 LPEHQRSDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID ALQTQLALVQ AEVVQMRMNQ 120 FTSSTSNQAT DSPENASHTS RLAASPQTKS FFSMDMVVDH ANMVESLWSY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-50 | 9 | 121 | 7 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-50 | 9 | 121 | 7 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.15143 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM463015 | 0.0 | AM463015.2 Vitis vinifera contig VV78X121155.8, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002264049.2 | 1e-125 | PREDICTED: LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 1e-71 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A5BKW9 | 1e-124 | A5BKW9_VITVI; Uncharacterized protein | ||||
STRING | VIT_19s0027g01120.t01 | 1e-125 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 5e-74 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01020353001 |
Entrez Gene | 100252484 |
Publications ? help Back to Top | |||
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