PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01020061001
Common NameLOC100253653, VIT_01s0026g01720
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Whirly
Protein Properties Length: 269aa    MW: 30168.2 Da    PI: 10.1821
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01020061001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly221.38.6e-69922301139
             Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrk 92 
                        s+yk+kaal+v++++p+f+ ldsg++k++++G++ll++a+a+++r+ydW++kq+f+ls+te+++l++l+++esceffhdp+++ s+eGkvrk
  GSVIVT01020061001  92 SIYKGKAALTVEPKAPEFTPLDSGAFKVSKEGFVLLQFAPAAGVRQYDWGRKQVFSLSVTEIGSLISLGARESCEFFHDPFKGRSEEGKVRK 183
                        7******************************************************************************************* PP

             Whirly  93 alkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                        +lkvePlpdGsG+f+nlsv+n+l++ +e++++Pv++aefavl+s+++
  GSVIVT01020061001 184 VLKVEPLPDGSGHFFNLSVQNKLLNMDENIYIPVTRAEFAVLISAFN 230
                        ********************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.7E-7980252IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544473.69E-7785263IPR009044ssDNA-binding transcriptional regulator
PfamPF085365.8E-6293227IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0032211Biological Processnegative regulation of telomere maintenance via telomerase
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MHHLHLLSSS FTIQNPRLCP NHSLSSLHSS SPLSFTSRTP LLLSTTRHFR KKRSLQCRQS  60
DYFQQQNITR RQPPNDSSFG GALQPRVFVG HSIYKGKAAL TVEPKAPEFT PLDSGAFKVS  120
KEGFVLLQFA PAAGVRQYDW GRKQVFSLSV TEIGSLISLG ARESCEFFHD PFKGRSEEGK  180
VRKVLKVEPL PDGSGHFFNL SVQNKLLNMD ENIYIPVTRA EFAVLISAFN FIVPYLLGWH  240
AYANSIKPDD TSRVNNANPR SGDFEWSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A1e-1145826712219p24: plant transcriptional regulator PBF-2
1l3a_B1e-1145826712219p24: plant transcriptional regulator PBF-2
1l3a_C1e-1145826712219p24: plant transcriptional regulator PBF-2
1l3a_D1e-1145826712219p24: plant transcriptional regulator PBF-2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.22640.0inflorescence| leaf
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4756701e-130AM475670.2 Vitis vinifera contig VV78X126919.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277278.10.0PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic
SwissprotQ9LL851e-119WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLD7TND70.0D7TND7_VITVI; Uncharacterized protein
STRINGVIT_01s0026g01720.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP23161635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-119ssDNA-binding transcriptional regulator