PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01020060001
Common NameLOC100262076, VIT_01s0026g01730
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 595aa    MW: 64339.3 Da    PI: 6.4006
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01020060001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30244303159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+aed++++++tYeg+Hnh+
  GSVIVT01020060001 244 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVRKQVQRCAEDTSILITTYEGTHNHP 303
                        58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-32229305IPR003657WRKY domain
SuperFamilySSF1182901.83E-27237305IPR003657WRKY domain
PROSITE profilePS5081128.885239305IPR003657WRKY domain
SMARTSM007741.0E-36244304IPR003657WRKY domain
PfamPF031065.8E-27245303IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MEAAALEIPV SGDPVKGEET TLMKFNGGDK GGVCDSMKVH LVAATERSSM ENNSIDPSTQ  60
KNQEDRIKSA KEEVGEVREE NERLKQILAK IKKDYQSLQM QFSEIAQHEE ARKSTDTILT  120
HQEEEEEETD LISLSLGRVS SAESKKDDKK TSFLSGKGKG DEKMDEGLAL GLECKFEPAP  180
TEHMMNASPE NSFEGPKEEE PSTETWPPSK ILKMGRSRDE EVLEQTHLKK ARVSVRARCD  240
TPTMNDGCQW RKYGQKIAKG NPCPRAYYRC TVSPSCPVRK QVQRCAEDTS ILITTYEGTH  300
NHPLPVSATA MASTTSAAAS MLRSGSSTSQ PGMEAFATSS TANLHGLNFS IPQNSRSQQF  360
YFPNSSFSTS NSHPTITLDL TAPTASHFNR LSSSFPSAPR YPATCLNFSS SSSSSPLDPN  420
NLPTSWGTLP SYGALSSYNK NQIGPFNFGM QPPSQENIYQ PYMQKINNQA PSQQSLTETI  480
ATATKAIAAD PTFRSALAAV ITSFVGNAGG AGGGENHVKG ENPSHNLKWG EFLSVNSALA  540
SSHNGVGCAS SYLNRSSSAN SQQQGNLISY PPSFPFSVPK SASASPSDHK DNIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21231305174WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.237420.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4624080.0AM462408.2 Vitis vinifera contig VV78X226055.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652374.10.0PREDICTED: probable WRKY transcription factor 72 isoform X1
TrEMBLA0A438CS050.0A0A438CS05_VITVI; Putative WRKY transcription factor 72
TrEMBLD7TND60.0D7TND6_VITVI; Uncharacterized protein
STRINGVIT_01s0026g01730.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-61WRKY DNA-binding protein 72