PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01020050001 | ||||||||
Common Name | VIT_01s0026g01820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | SBP | ||||||||
Protein Properties | Length: 117aa MW: 13214 Da PI: 10.5392 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 49.1 | 1.5e-15 | 24 | 55 | 47 | 78 |
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh l+efDe+krsC+rrLa+hn+rrrk+++ GSVIVT01020050001 24 LRFHVLQEFDEGKRSCQRRLAGHNKRRRKTHP 55 59***************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 12.622 | 1 | 53 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 5.4E-5 | 24 | 40 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.88E-12 | 25 | 58 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.3E-8 | 25 | 52 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MLMSTLLGKS NEISLKKIQK ENALRFHVLQ EFDEGKRSCQ RRLAGHNKRR RKTHPDVADN 60 GNSLNDDQAS GYLLISLLRI LSNVHPNNKS DQTKDQDLLS HILRSLARCS FHPNIG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 47 | 53 | KRRRKTH |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.5619 | 1e-104 | bud| flower| fruit| inflorescence| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during plant development. {ECO:0000269|PubMed:10524240}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM473856 | 1e-148 | AM473856.2 Vitis vinifera contig VV78X042896.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021676155.1 | 1e-37 | squamosa promoter-binding-like protein 1 isoform X1 | ||||
Refseq | XP_021676156.1 | 1e-37 | squamosa promoter-binding-like protein 1 isoform X2 | ||||
Refseq | XP_021676159.1 | 1e-37 | squamosa promoter-binding-like protein 1 isoform X4 | ||||
Swissprot | Q9S7P5 | 2e-34 | SPL12_ARATH; Squamosa promoter-binding-like protein 12 | ||||
TrEMBL | D7TNC7 | 7e-79 | D7TNC7_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0026g01820.t01 | 1e-79 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60030.1 | 8e-37 | squamosa promoter-binding protein-like 12 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01020050001 |
Publications ? help Back to Top | |||
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