PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019993001
Common NameLOC100256910, VIT_01s0026g02360
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 386aa    MW: 43110.1 Da    PI: 8.4525
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019993001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.41.2e-52131401128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        + pGfrFhPtdeelv +yLk+k+++k+l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+++
  GSVIVT01019993001  13 MLPGFRFHPTDEELVGFYLKRKIQQKPLSI-ELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPI 103
                        579***************************.89***************8888999************************************* PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl
  GSVIVT01019993001 104 YSSeGTKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 140
                        **956667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-5811171IPR003441NAC domain
PROSITE profilePS5100557.17213171IPR003441NAC domain
PfamPF023651.1E-2515140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007520developmental stageroot development stage
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MERNDADKLE EVMLPGFRFH PTDEELVGFY LKRKIQQKPL SIELIKQLDI YKYDPWDLPK  60
LATTGEKEWY FYCPRDRKYR NSARPNRVTG AGFWKATGTD RPIYSSEGTK CIGLKKSLVF  120
YKGRAAKGIK TDWMMHEFRL PSLTNSAPPK RLMDKSVPAN DSWAICRIFK KTNSMAQRAL  180
SHSWVSPLPE TTTSDILGQF ARNADHQFSS ENMSLAAKPS SGFHFCFTED LQQTSTTTFS  240
PIHVSSYKPI NPIAGKPSQL STAIGDLHTS FMLSQLGTSG PVTPTVDVSS MLLNMPSSML  300
GDLGKTSESI DFSGSEQLCN GFPAALLKNL NVIHGDDQWE SVRAMGFPFG LPLNMAEGWK  360
PNMLWDSSPC PSEMSTSYST NKCYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-5411744168NO APICAL MERISTEM PROTEIN
1ut4_B2e-5411744168NO APICAL MERISTEM PROTEIN
1ut7_A2e-5411744168NO APICAL MERISTEM PROTEIN
1ut7_B2e-5411744168NO APICAL MERISTEM PROTEIN
3swm_A2e-5411747171NAC domain-containing protein 19
3swm_B2e-5411747171NAC domain-containing protein 19
3swm_C2e-5411747171NAC domain-containing protein 19
3swm_D2e-5411747171NAC domain-containing protein 19
3swp_A2e-5411747171NAC domain-containing protein 19
3swp_B2e-5411747171NAC domain-containing protein 19
3swp_C2e-5411747171NAC domain-containing protein 19
3swp_D2e-5411747171NAC domain-containing protein 19
4dul_A2e-5411744168NAC domain-containing protein 19
4dul_B2e-5411744168NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4782680.0AM478268.2 Vitis vinifera contig VV78X141573.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270334.10.0PREDICTED: protein FEZ
SwissprotQ9ZVH01e-112FEZ_ARATH; Protein FEZ
TrEMBLF6HPC30.0F6HPC3_VITVI; Uncharacterized protein
STRINGVIT_01s0026g02360.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-114NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]