PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019967001
Common NameLOC100253313, VIT_01s0026g02600
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 337aa    MW: 37891.1 Da    PI: 8.2228
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019967001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-163277147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  GSVIVT01019967001 32 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 77
                       899*****************************.***********996 PP
2Myb_DNA-binding57.14.3e-1884127146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        r ++++eE+e+l da++++G++ W+ Iar ++ gRt++ +k++w+ 
  GSVIVT01019967001  84 RRAFSEEEEERLMDAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 127
                        678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.2012778IPR017930Myb domain
SMARTSM007173.3E-143180IPR001005SANT/Myb domain
PfamPF002495.2E-163277IPR001005SANT/Myb domain
SuperFamilySSF466896.74E-2832125IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-253385IPR009057Homeodomain-like
CDDcd001671.97E-133576No hitNo description
PROSITE profilePS5129426.82979133IPR017930Myb domain
SMARTSM007173.2E-1483131IPR001005SANT/Myb domain
PfamPF002491.4E-1484126IPR001005SANT/Myb domain
CDDcd001679.56E-1286126No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2086132IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDLNANINEE NPNENIVSGK ETDSGHSKLC ARGHWRPAED TKLKELVALY GPQNWNLIAE  60
KLEGRSGKSC RLRWFNQLDP RINRRAFSEE EEERLMDAHR LYGNKWAMIA RLFPGRTDNA  120
VKNHWHVIMA RKYREQSSAY RRRKLSQSVY RRMEEDPSFV CRDTATRTET MPPYSINLSS  180
GGINNNLSPF PFATFNGAVG GVVYGSNGSP QVNSGGEAIS SSKLPPHTGF CAQQTPFEFF  240
SGPKSHDMIS MFSQHRSWDR PRDEPNNNTS GFYPQYPPLM MAMQQSNYHN TCNFPNSTAS  300
TPQASATEPS SSENRVASHF ETIPPPFIDF LGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-33321327107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.155460.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4283920.0AM428392.2 Vitis vinifera contig VV78X017201.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651935.10.0PREDICTED: transcription factor RAX1
TrEMBLF6HPQ30.0F6HPQ3_VITVI; Uncharacterized protein
STRINGVIT_01s0026g02600.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-77myb domain protein 105