PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019952001
Common NameVIT_01s0026g02710
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 283aa    MW: 32458.7 Da    PI: 8.0663
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019952001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.53.6e-5591341128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+++yLk+++++k++++ ++i+evdiyk+ePw+Lp+k++ +e+ewyfFs+rd+ky++g r+nrat sgyWkatg+dk++
  GSVIVT01019952001   9 LPPGFRFHPTDEELIMYYLKNQATSKPCPV-SIIPEVDIYKFEPWELPEKAEFGENEWYFFSPRDRKYPNGARPNRATVSGYWKATGTDKAI 99 
                        79****************************.89***************99999*************************************** PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +s + + vg+kk Lvfykgr pkg ktdW+mheyrl
  GSVIVT01019952001 100 YS-GAKYVGVKKALVFYKGRPPKGIKTDWIMHEYRL 134
                        **.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-665161IPR003441NAC domain
PROSITE profilePS5100561.6559161IPR003441NAC domain
PfamPF023652.8E-2710134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDGKGSSQLP PGFRFHPTDE ELIMYYLKNQ ATSKPCPVSI IPEVDIYKFE PWELPEKAEF  60
GENEWYFFSP RDRKYPNGAR PNRATVSGYW KATGTDKAIY SGAKYVGVKK ALVFYKGRPP  120
KGIKTDWIMH EYRLSDSRPR PKKHNGSMRL DDWVLCRIYK KKHVGRILEE KEENLGPQIP  180
VTNSDDGGEQ HQVKFPRTFS LAHLLDMEYL GPISQLLGDN SYHSAFDFQG TISNIAGTDP  240
PGVDKFELFQ LPCQYNDSTK FQVNQNHIPN QPLFVNPVYE FQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-70916217166NO APICAL MERISTEM PROTEIN
1ut4_B2e-70916217166NO APICAL MERISTEM PROTEIN
1ut7_A2e-70916217166NO APICAL MERISTEM PROTEIN
1ut7_B2e-70916217166NO APICAL MERISTEM PROTEIN
3swm_A3e-70916220169NAC domain-containing protein 19
3swm_B3e-70916220169NAC domain-containing protein 19
3swm_C3e-70916220169NAC domain-containing protein 19
3swm_D3e-70916220169NAC domain-containing protein 19
3swp_A3e-70916220169NAC domain-containing protein 19
3swp_B3e-70916220169NAC domain-containing protein 19
3swp_C3e-70916220169NAC domain-containing protein 19
3swp_D3e-70916220169NAC domain-containing protein 19
4dul_A2e-70916217166NAC domain-containing protein 19
4dul_B2e-70916217166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.3500.0flower| fruit| inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3977840.0FQ397784.1 Vitis vinifera clone SS0AEB5YL05.
GenBankKT2162590.0KT216259.1 Vitis vinifera cultivar Cabernet Sauvignon NAC transcription factor 29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304057.10.0NAC transcription factor 29
SwissprotK4BWV21e-123NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLA0A438D9B60.0A0A438D9B6_VITVI; NAC transcription factor 29
TrEMBLD7TN620.0D7TN62_VITVI; NAC transcription factor 29
STRINGVIT_01s0026g02710.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-113NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]