PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01019913001 | ||||||||
Common Name | VIT_02s0025g04910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GRF | ||||||||
Protein Properties | Length: 213aa MW: 23315.7 Da PI: 9.2642 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81 | 1.1e-25 | 110 | 154 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ GSVIVT01019913001 110 DPEPGRCRRTDGKKWRCSKEAVPDQKYCERHMHRGRQRSRKHVEA 154 79*****************************************97 PP | |||||||
2 | QLQ | 52.6 | 1.4e-18 | 41 | 75 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Qlq+L++Q+l+yKy+ a++PvP +L+ +i+k GSVIVT01019913001 41 FTFLQLQELEHQALIYKYMEAGLPVPYHLVYPIWK 75 9999*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.2E-6 | 39 | 75 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.927 | 40 | 75 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.1E-14 | 41 | 74 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.847 | 110 | 154 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.5E-21 | 111 | 153 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MDSHNPPSKI ARLSGSPPIG LGLELGRGSG DMLGCTKSCG FTFLQLQELE HQALIYKYME 60 AGLPVPYHLV YPIWKSVACS LVGLTAGAYQ HHPGFLGLSP LYLDYKNSMD PEPGRCRRTD 120 GKKWRCSKEA VPDQKYCERH MHRGRQRSRK HVEASQLGAR TATSALNNTV RDAVTSNTNL 180 SISLPVSSTT NDISPKSVLQ LEKVRCCASF AP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.5482 | 0.0 | bud| inflorescence |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM449705 | 1e-177 | AM449705.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X253597.8, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002281639.1 | 1e-150 | PREDICTED: growth-regulating factor 10 | ||||
Swissprot | Q6EPP9 | 2e-47 | GRF10_ORYSJ; Growth-regulating factor 10 | ||||
TrEMBL | A0A438K2P4 | 1e-148 | A0A438K2P4_VITVI; Growth-regulating factor 10 | ||||
TrEMBL | F6HUK8 | 1e-148 | F6HUK8_VITVI; Uncharacterized protein | ||||
STRING | VIT_02s0025g04910.t01 | 1e-149 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 4e-37 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01019913001 |
Publications ? help Back to Top | |||
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