PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019880001
Common NameLOC100259923, VIT_02s0025g04630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TALE
Protein Properties Length: 292aa    MW: 33019.3 Da    PI: 6.7069
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019880001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.7e-082402732154
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        k +yp+++++++L +++gL+ +q+ +WF N+R +
  GSVIVT01019880001 240 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 273
                        469*****************************87 PP

2ELK25.53e-09194215122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK +L++++++++ ++++E++
  GSVIVT01019880001 194 ELKIELKQGFKSRIEDVREEIL 215
                        9*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.9E-192569IPR005540KNOX1
PfamPF037902.9E-172768IPR005540KNOX1
SMARTSM012561.2E-2483138IPR005541KNOX2
PfamPF037915.2E-1886137IPR005541KNOX2
PROSITE profilePS512139.132194214IPR005539ELK domain
PROSITE profilePS5007111.71214277IPR001356Homeobox domain
SMARTSM003895.6E-11216281IPR001356Homeobox domain
SuperFamilySSF466893.59E-16216280IPR009057Homeodomain-like
CDDcd000861.66E-10217278No hitNo description
Gene3DG3DSA:1.10.10.603.4E-25221279IPR009057Homeodomain-like
PfamPF059209.7E-18234273IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MQEPGLGMMG GGGIGGLSDG DQQQRQLKGE IVTHPLYEQL LAAHVACLRV ATPIDQLPLI  60
DAQLTQSHHL LRSYASQQHH HGNSLSPHER QELDNFLSQY LLVLCTFKEQ LQQHVRVHAV  120
EAVMACREIE QTLQALTGVS LGEGSGATMS DDEEEMQMDF SLDQGGGDGH DMMGFGPLLP  180
TESERTLMER VRQELKIELK QGFKSRIEDV REEILRKRRA GKLPGDTTSV LKNWWQQHSK  240
WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHSNSQ SVTALKSKRK R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12217273864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270290RKRNWHSNSQSVTALKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.31090.0bud| fruit| inflorescence| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4523561e-161AM452356.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X254642.3, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282231.10.0PREDICTED: homeobox protein HD1
SwissprotQ9FPQ81e-169KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLD7TW930.0D7TW93_VITVI; Uncharacterized protein
STRINGVIT_02s0025g04630.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-157KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]