PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01019880001 | ||||||||
Common Name | LOC100259923, VIT_02s0025g04630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | TALE | ||||||||
Protein Properties | Length: 292aa MW: 33019.3 Da PI: 6.7069 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.6 | 8.7e-08 | 240 | 273 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + GSVIVT01019880001 240 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 273 469*****************************87 PP | |||||||
2 | ELK | 25.5 | 3e-09 | 194 | 215 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ GSVIVT01019880001 194 ELKIELKQGFKSRIEDVREEIL 215 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 5.9E-19 | 25 | 69 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.9E-17 | 27 | 68 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.2E-24 | 83 | 138 | IPR005541 | KNOX2 |
Pfam | PF03791 | 5.2E-18 | 86 | 137 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.132 | 194 | 214 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.71 | 214 | 277 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.6E-11 | 216 | 281 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.59E-16 | 216 | 280 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.66E-10 | 217 | 278 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-25 | 221 | 279 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.7E-18 | 234 | 273 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MQEPGLGMMG GGGIGGLSDG DQQQRQLKGE IVTHPLYEQL LAAHVACLRV ATPIDQLPLI 60 DAQLTQSHHL LRSYASQQHH HGNSLSPHER QELDNFLSQY LLVLCTFKEQ LQQHVRVHAV 120 EAVMACREIE QTLQALTGVS LGEGSGATMS DDEEEMQMDF SLDQGGGDGH DMMGFGPLLP 180 TESERTLMER VRQELKIELK QGFKSRIEDV REEILRKRRA GKLPGDTTSV LKNWWQQHSK 240 WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHSNSQ SVTALKSKRK R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-12 | 217 | 273 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 270 | 290 | RKRNWHSNSQSVTALKSKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.3109 | 0.0 | bud| fruit| inflorescence| leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM452356 | 1e-161 | AM452356.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X254642.3, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002282231.1 | 0.0 | PREDICTED: homeobox protein HD1 | ||||
Swissprot | Q9FPQ8 | 1e-169 | KNAT7_ARATH; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | D7TW93 | 0.0 | D7TW93_VITVI; Uncharacterized protein | ||||
STRING | VIT_02s0025g04630.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-157 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01019880001 |
Entrez Gene | 100259923 |
Publications ? help Back to Top | |||
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