PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019834001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 592aa    MW: 65541.5 Da    PI: 8.0909
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019834001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.7e-1765111148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g WT+eEd ll  +vk + g++Wk+Ia+++  gRt+ qc +rwqk+l
  GSVIVT01019834001  65 KGGWTEEEDNLLTTVVKNFNGRNWKKIAEYLH-GRTDIQCLHRWQKVL 111
                        688*****************************.************986 PP
2Myb_DNA-binding56.66e-18117163148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+WT+eEd+ +v+ vk++G ++W+ Ia+ ++ gR +kqc++rw+++l
  GSVIVT01019834001 117 KGPWTKEEDDCIVESVKKYGCKRWSMIAKALP-GRIGKQCRERWHNHL 163
                        79******************************.*************97 PP
3Myb_DNA-binding48.52e-15169211145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        +++WT+eE+ +l  +++++G++ W+ Iar ++ gR ++ +k++w+
  GSVIVT01019834001 169 KDAWTKEEEAILTYYHQLYGNK-WAEIARFLP-GRNDNAIKNHWN 211
                        679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.66360111IPR017930Myb domain
SuperFamilySSF466895.46E-1963125IPR009057Homeodomain-like
SMARTSM007175.4E-1464113IPR001005SANT/Myb domain
PfamPF002491.6E-1465111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2467127IPR009057Homeodomain-like
CDDcd001674.28E-1268111No hitNo description
PROSITE profilePS5129430.198112167IPR017930Myb domain
SuperFamilySSF466892.25E-31114210IPR009057Homeodomain-like
SMARTSM007176.8E-16116165IPR001005SANT/Myb domain
PfamPF002492.9E-16117163IPR001005SANT/Myb domain
CDDcd001677.46E-15119163No hitNo description
Gene3DG3DSA:1.10.10.601.2E-26128169IPR009057Homeodomain-like
PROSITE profilePS5129418.808168218IPR017930Myb domain
SMARTSM007173.7E-15168216IPR001005SANT/Myb domain
PfamPF002492.2E-12169211IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-21170217IPR009057Homeodomain-like
CDDcd001672.99E-11171211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MSGVKEEDCN VDLNKEAEFV SNSSVSESSS DTAALRSASA QKTVITVIWA IFCRRITGPT  60
RRSTKGGWTE EEDNLLTTVV KNFNGRNWKK IAEYLHGRTD IQCLHRWQKV LNPELVKGPW  120
TKEEDDCIVE SVKKYGCKRW SMIAKALPGR IGKQCRERWH NHLDPAIKKD AWTKEEEAIL  180
TYYHQLYGNK WAEIARFLPG RNDNAIKNHW NCSIKKKSET KLVARSTLDK HGAIVPDSQN  240
CETNSNSTKG TAVKQNHGEI VSLHQKDGSE YAVGTCLTDL VLGNAYGGEN CLEPKSVIPS  300
GGDLNLPNGF QFDGKDATGT AVIGEPCTDN DNHANMCEPL SIPLGLPGSV KKNCNPCNAP  360
EAVASLTSKR RLESPKRPWT YDLSVTDLRF SSETGDSLSS LSAFRFGDDD TQVGKKSKLN  420
STPLQSEHIK NSWFCYEPIH SKDLLVASKN DCFPSTDNHT RYSSSPSCGF TTPKVAQSVS  480
INSRSPESIL RSSAMSFRNT PSIIRKRTSR KSSNNFSDCS TPAQTVPCTQ NGEDINSSKA  540
FPNAKQGLVA SLCDFDYKIS ILMPWSLTIL KKRTDQNELD DNGEEPFTCT K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-64652176158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-64652176158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.118840.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4286250.0AM428625.2 Vitis vinifera contig VV78X048623.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661205.10.0PREDICTED: uncharacterized protein LOC100263258
RefseqXP_010661209.10.0PREDICTED: uncharacterized protein LOC100263258
TrEMBLA0A438JJL90.0A0A438JJL9_VITVI; Transcription factor MYB3R-4
STRINGVIT_02s0025g04220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.28e-83myb domain protein 3r-5