PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01019834001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 592aa MW: 65541.5 Da PI: 8.0909 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.7e-17 | 65 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd ll +vk + g++Wk+Ia+++ gRt+ qc +rwqk+l GSVIVT01019834001 65 KGGWTEEEDNLLTTVVKNFNGRNWKKIAEYLH-GRTDIQCLHRWQKVL 111 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 56.6 | 6e-18 | 117 | 163 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ +v+ vk++G ++W+ Ia+ ++ gR +kqc++rw+++l GSVIVT01019834001 117 KGPWTKEEDDCIVESVKKYGCKRWSMIAKALP-GRIGKQCRERWHNHL 163 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.5 | 2e-15 | 169 | 211 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ +l +++++G++ W+ Iar ++ gR ++ +k++w+ GSVIVT01019834001 169 KDAWTKEEEAILTYYHQLYGNK-WAEIARFLP-GRNDNAIKNHWN 211 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.663 | 60 | 111 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.46E-19 | 63 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-14 | 64 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 65 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-24 | 67 | 127 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.28E-12 | 68 | 111 | No hit | No description |
PROSITE profile | PS51294 | 30.198 | 112 | 167 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.25E-31 | 114 | 210 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-16 | 116 | 165 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-16 | 117 | 163 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.46E-15 | 119 | 163 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-26 | 128 | 169 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.808 | 168 | 218 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-15 | 168 | 216 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-12 | 169 | 211 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-21 | 170 | 217 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.99E-11 | 171 | 211 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 592 aa Download sequence Send to blast |
MSGVKEEDCN VDLNKEAEFV SNSSVSESSS DTAALRSASA QKTVITVIWA IFCRRITGPT 60 RRSTKGGWTE EEDNLLTTVV KNFNGRNWKK IAEYLHGRTD IQCLHRWQKV LNPELVKGPW 120 TKEEDDCIVE SVKKYGCKRW SMIAKALPGR IGKQCRERWH NHLDPAIKKD AWTKEEEAIL 180 TYYHQLYGNK WAEIARFLPG RNDNAIKNHW NCSIKKKSET KLVARSTLDK HGAIVPDSQN 240 CETNSNSTKG TAVKQNHGEI VSLHQKDGSE YAVGTCLTDL VLGNAYGGEN CLEPKSVIPS 300 GGDLNLPNGF QFDGKDATGT AVIGEPCTDN DNHANMCEPL SIPLGLPGSV KKNCNPCNAP 360 EAVASLTSKR RLESPKRPWT YDLSVTDLRF SSETGDSLSS LSAFRFGDDD TQVGKKSKLN 420 STPLQSEHIK NSWFCYEPIH SKDLLVASKN DCFPSTDNHT RYSSSPSCGF TTPKVAQSVS 480 INSRSPESIL RSSAMSFRNT PSIIRKRTSR KSSNNFSDCS TPAQTVPCTQ NGEDINSSKA 540 FPNAKQGLVA SLCDFDYKIS ILMPWSLTIL KKRTDQNELD DNGEEPFTCT K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-64 | 65 | 217 | 6 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-64 | 65 | 217 | 6 | 158 | MYB PROTO-ONCOGENE PROTEIN |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.11884 | 0.0 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM428625 | 0.0 | AM428625.2 Vitis vinifera contig VV78X048623.11, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010661205.1 | 0.0 | PREDICTED: uncharacterized protein LOC100263258 | ||||
Refseq | XP_010661209.1 | 0.0 | PREDICTED: uncharacterized protein LOC100263258 | ||||
TrEMBL | A0A438JJL9 | 0.0 | A0A438JJL9_VITVI; Transcription factor MYB3R-4 | ||||
STRING | VIT_02s0025g04220.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 8e-83 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01019834001 |