PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019810001
Common NameVIT_02s0025g04000
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 151aa    MW: 17294.4 Da    PI: 4.7268
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019810001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS153.71.7e-471135241374
               GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                        ++eqea+hn+ s+ +r++++l+yysa+fds++ +lp +s  r+kvE++ ++rei+n++aceg++r+erhe++ekWr+r+e+ GF+ v +se+
  GSVIVT01019810001   1 MAEQEAEHNELSLETRVSNSLRYYSAIFDSIDYSLPLDSPVRMKVEEM-FAREIRNIIACEGSDRVERHESFEKWRRRMEQGGFRCVGISER 91 
                        68**********************************************.******************************************* PP

               GRAS 333 aakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                        ++ q ++ll++++ + y+v ++  +++l+l W d+pL++vSaW+
  GSVIVT01019810001  92 EMLQSQMLLKMYSCENYSVSKRgqDAALTLSWLDQPLYTVSAWT 135
                        *************999****886578888**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035145.8E-451135IPR005202Transcription factor GRAS
PROSITE profilePS5098519.6671113IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MAEQEAEHNE LSLETRVSNS LRYYSAIFDS IDYSLPLDSP VRMKVEEMFA REIRNIIACE  60
GSDRVERHES FEKWRRRMEQ GGFRCVGISE REMLQSQMLL KMYSCENYSV SKRGQDAALT  120
LSWLDQPLYT VSAWTQVDVA GSSSSFSLPS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-181135248379Protein SCARECROW
5b3h_A5e-181135247378Protein SCARECROW
5b3h_D5e-181135247378Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4326660.0AM432666.2 Vitis vinifera contig VV78X204484.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276880.11e-102PREDICTED: scarecrow-like protein 28 isoform X1
RefseqXP_019072644.11e-102PREDICTED: scarecrow-like protein 28 isoform X2
SwissprotQ9CAN35e-48SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A438JJQ71e-106A0A438JJQ7_VITVI; Scarecrow-like protein 28
STRINGVIT_02s0025g04000.t011e-101(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP55071521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.12e-50GRAS family protein