PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019809001
Common NameVIT_02s0025g04000
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 391aa    MW: 43252 Da    PI: 7.156
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019809001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS152.63.6e-472503891141
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++lL++c+ea+ s++ +++++++a+l +lasp+g+p+ R++ayfteALa r++r ++ +++  +p+e + +  +++ +al+l+++vsPi+k
  GSVIVT01019809001 250 LISLLMACVEAIGSRNIAAISHFIAKLGDLASPKGSPISRVTAYFTEALALRVSRLWPAIFHVTTPRELD-RADDDTWTALRLLNQVSPIPK 340
                        6799***********************************************************9999997.67888999************* PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpps 141
                        f h+t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p +
  GSVIVT01019809001 341 FIHFTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSH 389
                        *********************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.488224390IPR005202Transcription factor GRAS
PfamPF035141.2E-44250389IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MLAGCSTLLS PRHRLRSETS AQFQACHFQL PSMSTQRLDL PCSFPRKDAS RSQPIRPVGL  60
SVEKSMEAKT STCSLKQNIR LPPSATSAQT TFIEGRREIK DEFWEKGKSL KRFAEQGSVD  120
ESCMSRAKRK RRSQLVSFPL TCSGEEERVC FVPSEVISPP LPLSNNPWLE SVVTEITSLG  180
DNDLETSHGV VKEASGSSNS SESHPLALRL HESTVEQEIG NGSSLPHLHE GPKMSGDDEN  240
NQGEHQGFEL ISLLMACVEA IGSRNIAAIS HFIAKLGDLA SPKGSPISRV TAYFTEALAL  300
RVSRLWPAIF HVTTPRELDR ADDDTWTALR LLNQVSPIPK FIHFTSNEIL LRAFEGKDRV  360
HIIDFDIKQG LQWPSLFQSL ASRTNPPSHM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2425739026160Protein SCARECROW
5b3h_A2e-2425739025159Protein SCARECROW
5b3h_D2e-2425739025159Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4503750.0AM450375.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X271656.5, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276880.10.0PREDICTED: scarecrow-like protein 28 isoform X1
RefseqXP_019072644.10.0PREDICTED: scarecrow-like protein 28 isoform X2
SwissprotQ9CAN31e-115SCL28_ARATH; Scarecrow-like protein 28
TrEMBLF6HUE70.0F6HUE7_VITVI; Uncharacterized protein
STRINGVIT_02s0025g04000.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP55071521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-114GRAS family protein