PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019717001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 749aa    MW: 81523.2 Da    PI: 8.2028
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019717001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-1878128256
                AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                        ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a+++a+++l+g+
  GSVIVT01019717001  78 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDQAARSLRGA 128
                        689******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-1278127IPR001471AP2/ERF domain
PROSITE profilePS5103220.50878135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-2878135IPR001471AP2/ERF domain
SMARTSM003801.3E-3578141IPR001471AP2/ERF domain
CDDcd000182.69E-2978135No hitNo description
PRINTSPR003674.3E-77990IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-1979135IPR016177DNA-binding domain
PRINTSPR003674.3E-7101117IPR001471AP2/ERF domain
PfamPF008928.9E-13391533IPR000620EamA domain
SuperFamilySSF1034814.05E-7426536No hitNo description
PfamPF008922.0E-11571708IPR000620EamA domain
SuperFamilySSF1034815.89E-9633713No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MHGHLLPISA PSSSPPLFLS FPLGAPSLAA SYSVSFYRRR SEEVECVAEE AVVMHRGGGD  60
VGMATRGRKK TSSRGHHRFV GVRQRPSGRW VAEIKDSLQK VRLWLGTFDT AEDAARAYDQ  120
AARSLRGANA RTNFELPPSS DSSDCDVNGN CMADGVEPFS FDQFCATQVD GLLGALRAKL  180
LDGKGLQGHP AAVVGSPHNS IGTPKREVSM PAGIVNPMLL QGPSYSPASK APGLLLDHHD  240
NEVESGQAGV QWQSIYQIAS PQLPWSLQPQ MNPVHEGGLF CTTTTAPAIT TIWPTSATTV  300
ATSDFPYSEQ GSHDDLPSNK KRKVDGSTMP LFQINGATQG VWPSEQQLLH CDNGSWDPLL  360
YVSSVLDRRV LPVTPSLLKW MAGLKSFDTW SPVIVMLAVD FAFAVVNILL KEVLNAEMNH  420
LVLITYRQSI STIFLVPIGY FWERNSRPKL TLRILCYLFF SALVGASLTQ YFFLLGIQYT  480
SATFACAFIN MVPAITFIMS LPFGLEIVNI KTNRGRAKLI GTLVCICGAM ILTLYKGMPL  540
VKYSRPEAPS PTMDQAISLS SGKKTERWTV GSIALMGGTL LWSSWFLIQS NIGKLYPCQY  600
SSTAIMSFFG AIQSAVISLS MDRNLSLWIL KGKTEILTVI YAGVVGSGLC YVAMSWCVKK  660
RGPVFTAAFS PLVQIMAVMF DIPILHEQLH LGSVLGSATV IAGLYILLWG KKKDAENSSM  720
ELVQEAEEVK DQEAQLQVTT ITSGSRCP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1654134171Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4763560.0AM476356.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X215721.29, clone ENTAV 115.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP121222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-18related to AP2 11