PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01019600001

Common Name

VIT_02s0025g02070

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

Nin-like

Protein Properties

Length: 875aa MW: 96991.9 Da PI: 6.0194

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01019600001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.2	3.8e-29	559	609	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ GSVIVT01019600001 559 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 609 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.359	548	629	IPR003035	RWP-RK domain
Pfam	PF02042	3.3E-26	562	609	IPR003035	RWP-RK domain
PROSITE profile	PS51745	22.063	771	853	IPR000270	PB1 domain
SMART	SM00666	8.4E-23	771	853	IPR000270	PB1 domain
Pfam	PF00564	2.0E-16	771	852	IPR000270	PB1 domain
SuperFamily	SSF54277	4.25E-22	771	855	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-24	772	852	No hit	No description
CDD	cd06407	2.54E-35	772	852	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 875 aa Download sequence Send to blast
MSEPDEGIRK SRDCPPPSQA VDRDSFMDFD LDLDGSWPLD QISFVSNPMS PFLFSSSDQP 60 CSPLWAFSDD ADDKPSAIGV GGGLRLSECS RFLTCNPDLI PESRTENDEK RRLPPSVFTL 120 TPIENPDGCC IIKERMTQAL RYFKESTEQH VLAQVWAPVK NGDRCLLTTY GQPFVLDPHS 180 NGLHQYRMIS LTYTFSVDGE SDGALRLPAR VFRQKLPEWT PNVQYYSSRE YSRLNHALHY 240 NVRGTLALPV FEPSGPSCVG VLELIMTSQK INYAPEVDKV CKALEAVNLK SSEILEHPKA 300 QICNEGRQNA LAEILEIFTV VCETYKLPLA QTWVPCRHRS VLAGGGGLRK SCSSFDGSCM 360 GQVCMSTTDV AFYVVDAHMW GFREACAEHH LQKGQGVAGR AFESHNSCYC SNITQFCKTE 420 YPLVHYARMF GLTCCFAICL RSTHTGNDDY ILEFFLPPSI TDSRDQQTLL DSLLATMKQH 480 FQSLRVASGK EFEEEEKSVE IIKLPMNGKL DSRLESIQIS QSTPSPPGPD ILPSRGEMQQ 540 LDSTKHQLMP SERKRGKTEK SISLEVLQQY FAGSLKDAAK SLGVCPTTMK RICRQHGISR 600 WPSRKINKVN RSLSKLKRVI ESVQVSERAF GLTSLTSSPL PVAVGSISWP ATLNGPYQQN 660 SPELGKGATG SKTRSGSREE SAGTPTSHGS CQGSPENETT SAKNHSNSPI YDQSAFSIPE 720 ALITTEPQTH FGGMLIEDAG SSKDLRNLCP SVADAMLDER VPESTRPDVR TMTIKATYRD 780 DIIRFRIPLT SGIVELKEEV AKRLKLEVGT FDIKYLDDDH EWVLIACNAD LQECMDISWT 840 TGSNIIRLLV QDLMTNLGSS CESTGETNCK ILNG*

Sequence ? help Back to Top

Protein Sequence Length: 875 aa Download sequence Send to blast

MSEPDEGIRK SRDCPPPSQA VDRDSFMDFD LDLDGSWPLD QISFVSNPMS PFLFSSSDQP  60
CSPLWAFSDD ADDKPSAIGV GGGLRLSECS RFLTCNPDLI PESRTENDEK RRLPPSVFTL  120
TPIENPDGCC IIKERMTQAL RYFKESTEQH VLAQVWAPVK NGDRCLLTTY GQPFVLDPHS  180
NGLHQYRMIS LTYTFSVDGE SDGALRLPAR VFRQKLPEWT PNVQYYSSRE YSRLNHALHY  240
NVRGTLALPV FEPSGPSCVG VLELIMTSQK INYAPEVDKV CKALEAVNLK SSEILEHPKA  300
QICNEGRQNA LAEILEIFTV VCETYKLPLA QTWVPCRHRS VLAGGGGLRK SCSSFDGSCM  360
GQVCMSTTDV AFYVVDAHMW GFREACAEHH LQKGQGVAGR AFESHNSCYC SNITQFCKTE  420
YPLVHYARMF GLTCCFAICL RSTHTGNDDY ILEFFLPPSI TDSRDQQTLL DSLLATMKQH  480
FQSLRVASGK EFEEEEKSVE IIKLPMNGKL DSRLESIQIS QSTPSPPGPD ILPSRGEMQQ  540
LDSTKHQLMP SERKRGKTEK SISLEVLQQY FAGSLKDAAK SLGVCPTTMK RICRQHGISR  600
WPSRKINKVN RSLSKLKRVI ESVQVSERAF GLTSLTSSPL PVAVGSISWP ATLNGPYQQN  660
SPELGKGATG SKTRSGSREE SAGTPTSHGS CQGSPENETT SAKNHSNSPI YDQSAFSIPE  720
ALITTEPQTH FGGMLIEDAG SSKDLRNLCP SVADAMLDER VPESTRPDVR TMTIKATYRD  780
DIIRFRIPLT SGIVELKEEV AKRLKLEVGT FDIKYLDDDH EWVLIACNAD LQECMDISWT  840
TGSNIIRLLV QDLMTNLGSS CESTGETNCK ILNG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.17311	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM482982	0.0	AM482982.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X185475.33, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010659716.1	0.0	PREDICTED: protein NLP6
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	F6HU52	0.0	F6HU52_VITVI; Uncharacterized protein
STRING	VIT_02s0025g02070.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	GSVIVT01019600001

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]