PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019519001
Common NameVIT_02s0025g01360
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 265aa    MW: 29443.6 Da    PI: 10.7087
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019519001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-19103153256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr+++ +g+WvAeIr p +   r r++lg+f+tae Aa a+++a+ kl+ge
  GSVIVT01019519001 103 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTFDTAEAAAYAYDRAAYKLRGE 153
                        59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.52E-20102162No hitNo description
PROSITE profilePS5103223.327103160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-31103161IPR001471AP2/ERF domain
SMARTSM003802.4E-36103166IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23103161IPR016177DNA-binding domain
PRINTSPR003671.4E-10104115IPR001471AP2/ERF domain
PfamPF008473.0E-13104153IPR001471AP2/ERF domain
PRINTSPR003671.4E-10126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEKMQENNLQ FSFQHGVDIR SSLSQLLLTS GSNTLDSIFS HCPPSTSVTN PVLEPLGSSV  60
YLRQRDLLQK FSEESRASGR ITSNSLTSSL HHSQFLNPCK KKLYRGVRQR HWGKWVAEIR  120
LPQNRMRVWL GTFDTAEAAA YAYDRAAYKL RGEYARLNFP NLRDASKLGF GDCARLNALK  180
SSVDAKIQAI CQKVKRERAH KTTKRKSTST GGEGGGGEST GGAKCCHQAF LKMSSGKVTT  240
RGPLSPRTAR CYINLCSRSM LFTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20100160263ATERF1
3gcc_A3e-20100160263ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.263130.0inflorescence
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4764490.0AM476449.2 Vitis vinifera contig VV78X237697.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270561.21e-164PREDICTED: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W28e-61ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLD7TVE90.0D7TVE9_VITVI; Uncharacterized protein
STRINGVIT_02s0025g01360.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.15e-50ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]