PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019419001
Common NameVIT_02s0025g00420
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 324aa    MW: 35701.9 Da    PI: 6.1732
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019419001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.4e-31136194259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++prsYYrC+s  gC ++k+vers++dp+++++tY+ eH h+
  GSVIVT01019419001 136 SDVWAWRKYGQKPIKGSPYPRSYYRCSSLkGCLARKQVERSRTDPEIFIVTYTAEHSHS 194
                        79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-31121196IPR003657WRKY domain
SuperFamilySSF1182904.05E-26130196IPR003657WRKY domain
PROSITE profilePS5081132.833130196IPR003657WRKY domain
SMARTSM007741.4E-35135195IPR003657WRKY domain
PfamPF031063.8E-25137193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGDWDLQSVV RGCAINEASS AAFMDTSLPC FGPLAIQQDE LLFSFPDFFE TTTVLDELEQ  60
LYKPFYPVLQ PLSPVRTAAA PSISMEDPKK MKGQDHLPGT ADNGGGGPGS HGAKPKKRKN  120
QQKRVVQHVT AEGLSSDVWA WRKYGQKPIK GSPYPRSYYR CSSLKGCLAR KQVERSRTDP  180
EIFIVTYTAE HSHSHPTRRN SLAGITRNKF STPKKPSKAE PPSTPTTVAN DSSSSPISTS  240
DFSATTPLMS AMEDELQPYV SQQEIRGEED QKLNERNNTN EVHISDEILN NDFFLGLEDM  300
DFSVQFPSSF LQPWFAATAA GGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-18124196274WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.172530.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3824930.0FQ382493.1 Vitis vinifera clone SS0ABG54YM22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010658402.10.0PREDICTED: WRKY transcription factor 22 isoform X2
TrEMBLF6HUN40.0F6HUN4_VITVI; Uncharacterized protein
STRINGVIT_02s0025g00420.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-43WRKY family protein