PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019410001
Common NameLOC100244939, VIT_02s0025g00320
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 305aa    MW: 34318.6 Da    PI: 4.9522
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019410001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.2e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl
  GSVIVT01019410001 14 RGLWSPEEDEKLIRYITTYGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
                       788*******************************************97 PP
2Myb_DNA-binding54.42.9e-1767111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rgr+T+eE++l+++++   G++ W+ Ia++++ gRt++++k++w+++
  GSVIVT01019410001  67 RGRFTPEEEKLIINLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                        89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-25663IPR009057Homeodomain-like
PROSITE profilePS5129417.212961IPR017930Myb domain
SuperFamilySSF466892.59E-3011108IPR009057Homeodomain-like
SMARTSM007171.8E-121363IPR001005SANT/Myb domain
PfamPF002494.8E-151461IPR001005SANT/Myb domain
CDDcd001671.69E-111761No hitNo description
PROSITE profilePS5129425.81662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2564116IPR009057Homeodomain-like
SMARTSM007171.1E-1666114IPR001005SANT/Myb domain
PfamPF002499.8E-1667111IPR001005SANT/Myb domain
CDDcd001673.00E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT TYGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIN LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPS  120
APLASSITNT EHSQLGYGSS QLDMVNQDLM MKQPAQETLF SSPAPLFMFD TGSLDLIGDG  180
NGRTELFQEV AGLSSETWQL NQHQVEALPP PASYSVGMDT NYLPPLVENI ENMVPMQVQS  240
CSIDEEGEIA LECLQRQELN DWVESQQCPS FLFWDQVEGH LGGEEIAPPS SNMGAVLSSY  300
STSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4334220.0AM433422.2 Vitis vinifera contig VV78X199170.15, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273004.10.0PREDICTED: transcription factor MYB86
TrEMBLA0A438E5Z50.0A0A438E5Z5_VITVI; Transcription factor MYB26
TrEMBLD7TV590.0D7TV59_VITVI; Uncharacterized protein
STRINGVIT_02s0025g00320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.11e-103myb domain protein 103