PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01019180001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 137aa MW: 15450.3 Da PI: 10.7587 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.3 | 3.2e-26 | 59 | 109 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n+ rqvtfskRr g++KKA+ +S+LCdae+a+i+fs gkl+eyss GSVIVT01019180001 59 KKIDNTAARQVTFSKRRRGLFKKAQDISILCDAEIALIVFSAAGKLFEYSS 109 68***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.889 | 51 | 111 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-36 | 51 | 110 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.76E-27 | 51 | 113 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.47E-33 | 52 | 131 | No hit | No description |
PRINTS | PR00404 | 8.1E-27 | 53 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-23 | 60 | 107 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-27 | 73 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-27 | 88 | 109 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MLKTILCCGH CSFSIFLFLS SKQLVAGSVG FVTCPHNWKQ HRKGLVENFP MARQKIQIKK 60 IDNTAARQVT FSKRRRGLFK KAQDISILCD AEIALIVFSA AGKLFEYSSS RLVLSSLPFL 120 LFIHRYMNLS AFCRQS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 1e-17 | 51 | 112 | 1 | 62 | MEF2 CHIMERA |
6bz1_B | 1e-17 | 51 | 112 | 1 | 62 | MEF2 CHIMERA |
6bz1_C | 1e-17 | 51 | 112 | 1 | 62 | MEF2 CHIMERA |
6bz1_D | 1e-17 | 51 | 112 | 1 | 62 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.14707 | 1e-149 | stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM423324 | 1e-158 | AM423324.2 Vitis vinifera contig VV78X231511.14, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002262889.2 | 5e-66 | PREDICTED: MADS-box protein SVP isoform X2 | ||||
Refseq | XP_010661297.2 | 5e-66 | PREDICTED: MADS-box protein SVP isoform X3 | ||||
TrEMBL | A0A438G6U0 | 4e-59 | A0A438G6U0_VITVI; MADS-box protein JOINTLESS | ||||
STRING | VIT_15s0024g02000.t01 | 2e-49 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 3e-30 | AGAMOUS-like 24 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01019180001 |