PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01019109001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | WRKY | ||||||||
Protein Properties | Length: 487aa MW: 53867.7 Da PI: 8.5284 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.7 | 6.6e-30 | 76 | 133 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK++kgse++rsYY+Ct+ +Cp++kkv++s+ d++++ei+Y+g Hnh+k GSVIVT01019109001 76 EDGYNWRKYGQKSMKGSEHTRSYYKCTHLDCPMRKKVQQSH-DGQITEIIYKGGHNHPK 133 7***************************************9.***************85 PP | |||||||
2 | WRKY | 95.4 | 4.1e-30 | 237 | 295 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 l+Dgy+WrKYGqK+vkg+ +pr+YY+Cts+gC+v+++ver+++++k ++ tYeg+Hnhe GSVIVT01019109001 237 LNDGYRWRKYGQKVVKGNLHPRNYYKCTSTGCSVRRHVERASNNQKSIIATYEGKHNHE 295 58********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-26 | 70 | 134 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.27E-23 | 74 | 134 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-32 | 75 | 133 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-24 | 76 | 132 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.402 | 76 | 134 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.3E-32 | 222 | 297 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-26 | 230 | 297 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.878 | 232 | 297 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.9E-33 | 237 | 296 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-23 | 238 | 295 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MCGIYGLIRF LPLPILLKVL GLKFTIKLVL QHIHQWVSNL PQNSLQKLLL KTMWMHHIPE 60 EQKGTYPSMG MGRTSEDGYN WRKYGQKSMK GSEHTRSYYK CTHLDCPMRK KVQQSHDGQI 120 TEIIYKGGHN HPKPLPSRRS ALGSTLPFNE MSGLGEGGGS SVRVEGTPDL SLTVASQDDG 180 EDGATQGSIS LGDDADDEGS QSKKRKKENC MTEKNLASRT VREPRVVVQV ECESDVLNDG 240 YRWRKYGQKV VKGNLHPRNY YKCTSTGCSV RRHVERASNN QKSIIATYEG KHNHEVPAAR 300 NSSHVNSSGG NLPSAAPGAQ SALALHRNAN APRPEALLQD LVPHFDIKPE FSNQYIRHSM 360 LGNFANDMKF GPSSLYSMQF PPLQNTMLYA PFGLDSNNAD PHQPGSVAPV APDFPISLPL 420 NLPPPANLGL PGFDFNSHGN PIGQVEPYFV GQQLQENDMR FLHPKEEKKD DIGDATTSCS 480 SSTIYH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-30 | 64 | 298 | 1 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 7e-30 | 64 | 298 | 1 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 202 | 206 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM452039 | 0.0 | AM452039.2 Vitis vinifera contig VV78X103161.2, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002272232.2 | 0.0 | PREDICTED: uncharacterized protein LOC100253049 isoform X4 | ||||
Refseq | XP_010649244.1 | 0.0 | PREDICTED: uncharacterized protein LOC100253049 isoform X4 | ||||
TrEMBL | A5BA82 | 0.0 | A5BA82_VITVI; Uncharacterized protein | ||||
TrEMBL | F6GX25 | 0.0 | F6GX25_VITVI; Uncharacterized protein | ||||
STRING | VIT_04s0023g00470.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26440.1 | 7e-75 | WRKY DNA-binding protein 34 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01019109001 |