PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019109001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 487aa    MW: 53867.7 Da    PI: 8.5284
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019109001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.6e-3076133260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +DgynWrKYGqK++kgse++rsYY+Ct+ +Cp++kkv++s+ d++++ei+Y+g Hnh+k
  GSVIVT01019109001  76 EDGYNWRKYGQKSMKGSEHTRSYYKCTHLDCPMRKKVQQSH-DGQITEIIYKGGHNHPK 133
                        7***************************************9.***************85 PP

2WRKY95.44.1e-30237295159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        l+Dgy+WrKYGqK+vkg+ +pr+YY+Cts+gC+v+++ver+++++k ++ tYeg+Hnhe
  GSVIVT01019109001 237 LNDGYRWRKYGQKVVKGNLHPRNYYKCTSTGCSVRRHVERASNNQKSIIATYEGKHNHE 295
                        58********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-2670134IPR003657WRKY domain
SuperFamilySSF1182901.27E-2374134IPR003657WRKY domain
SMARTSM007741.2E-3275133IPR003657WRKY domain
PfamPF031064.6E-2476132IPR003657WRKY domain
PROSITE profilePS5081121.40276134IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-32222297IPR003657WRKY domain
SuperFamilySSF1182901.7E-26230297IPR003657WRKY domain
PROSITE profilePS5081133.878232297IPR003657WRKY domain
SMARTSM007744.9E-33237296IPR003657WRKY domain
PfamPF031061.7E-23238295IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MCGIYGLIRF LPLPILLKVL GLKFTIKLVL QHIHQWVSNL PQNSLQKLLL KTMWMHHIPE  60
EQKGTYPSMG MGRTSEDGYN WRKYGQKSMK GSEHTRSYYK CTHLDCPMRK KVQQSHDGQI  120
TEIIYKGGHN HPKPLPSRRS ALGSTLPFNE MSGLGEGGGS SVRVEGTPDL SLTVASQDDG  180
EDGATQGSIS LGDDADDEGS QSKKRKKENC MTEKNLASRT VREPRVVVQV ECESDVLNDG  240
YRWRKYGQKV VKGNLHPRNY YKCTSTGCSV RRHVERASNN QKSIIATYEG KHNHEVPAAR  300
NSSHVNSSGG NLPSAAPGAQ SALALHRNAN APRPEALLQD LVPHFDIKPE FSNQYIRHSM  360
LGNFANDMKF GPSSLYSMQF PPLQNTMLYA PFGLDSNNAD PHQPGSVAPV APDFPISLPL  420
NLPPPANLGL PGFDFNSHGN PIGQVEPYFV GQQLQENDMR FLHPKEEKKD DIGDATTSCS  480
SSTIYH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-3064298178Probable WRKY transcription factor 4
2lex_A7e-3064298178Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202206KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4520390.0AM452039.2 Vitis vinifera contig VV78X103161.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272232.20.0PREDICTED: uncharacterized protein LOC100253049 isoform X4
RefseqXP_010649244.10.0PREDICTED: uncharacterized protein LOC100253049 isoform X4
TrEMBLA5BA820.0A5BA82_VITVI; Uncharacterized protein
TrEMBLF6GX250.0F6GX25_VITVI; Uncharacterized protein
STRINGVIT_04s0023g00470.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.17e-75WRKY DNA-binding protein 34