PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019043001
Common NameVIT_04s0023g01020
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TALE
Protein Properties Length: 679aa    MW: 74866.1 Da    PI: 9.4681
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019043001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-094875241954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  GSVIVT01019043001 487 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 524
                        664459******************************88 PP
2BELL95.26e-313604181472
               BELL  14 slleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         l   Vd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdaia q+
  GSVIVT01019043001 360 ILYTRVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIAVQL 418
                        56789***************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.2E-75258416IPR006563POX domain
PfamPF075264.4E-49263415IPR006563POX domain
PROSITE profilePS5007112.6465528IPR001356Homeobox domain
CDDcd000862.79E-12468529No hitNo description
SMARTSM003892.5E-9468532IPR001356Homeobox domain
SuperFamilySSF466893.25E-17469535IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28471534IPR009057Homeodomain-like
PfamPF059203.3E-18485524IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MSKAENEKKG GQKGKIEKAP TKTHLMPSLF LFTTPPLPPV FSHSKVHNPI PIAHKSNFAN  60
SMSQDFHQGI FSFSNGFERS AVTHQEQQQQ QQHITQQIRR DKLRTAGMLS EMFNFATANQ  120
NVNNRDSLAQ HHHQISSINA DSAAAMQLFL MNPQPRSPSP PPQPHPHPHP PATSSTLHML  180
LPNQSTSLQG FATASAPGGG AFGIVEGQGL SLSLSSSLQH LEAAKAEELR MGDSGMLFYG  240
QGGVGHNHQV HVGFGSSLGA VNVMRNSKYV KAAQELLEEF CSVGRGQFKK NKFGRHNTNP  300
NSNPGGGSAG GGGSSSSSKD LPPLSAADRI EHQRRKVKLL SMLDEAWKTN RKFRQVSMNI  360
LYTRVDRRYN HYCEQMQMVV NSFDLVMGFG AAVPYTALAQ KAMSRHFRCL KDAIAVQLKH  420
SCELLGEKDP SGTSGVTKGE TPRLRLLEQS LRQQRAFHQM GMMEQEAWRP QRGLPERSVN  480
ILRSWLFEHF LHPYPSDADK HLLARQTGLS RNQVSNWFIN ARVRLWKPMV EEMYQQETKE  540
EEGSEEREVN QLQSTDGDPS LIAINRQCFS ENQAKQATST IPTTTSTSAD VSPPPPVSQC  600
FPTTHDSDLH HRLPVDDTCR RGSLVSSDFG TTSTNPDIGS TLIRFGTTAG DVSLTLGLRH  660
AGNLPDKSPF SVRDFGGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16474532563Homeobox protein Meis2
3k2a_B5e-16474532563Homeobox protein Meis2
4xrm_A5e-16474532563Homeobox protein Meis2
4xrm_B5e-16474532563Homeobox protein Meis2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4836480.0AM483648.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X165152.5, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002269670.20.0PREDICTED: BEL1-like homeodomain protein 2
RefseqXP_019075099.10.0PREDICTED: BEL1-like homeodomain protein 2
SwissprotQ94KL51e-161BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBLF6GX070.0F6GX07_VITVI; Uncharacterized protein
STRINGVIT_04s0023g01020.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-128BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]