PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019006001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 577aa    MW: 63681.7 Da    PI: 5.9512
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019006001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS310.15.1e-952075672374
               GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        ve L+++Ae++ s++ +laqa+Larl+++ ++p g+p+qR+a+yf+eAL++ l++       + + s++s ++ +++++a+k+fs +sPi  
  GSVIVT01019006001 207 VEELIRAAECFGSNNSQLAQAILARLNQRlRAPVGKPLQRAAFYFKEALHSLLTG-------SNRKSHSSASEIVQTIKAYKAFSMISPIAM 291
                        689*************************99*************************.......445555556779****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                        fs++ta qa+leav+g+  +HiiDfdi+ G+Q++++++++a+R+     +pp lRiT+v+++e   + e + ++e+L +fA+el+++f++++
  GSVIVT01019006001 292 FSNFTASQALLEAVDGSLFIHIIDFDIGLGGQYASFMKEIADRSeackVNPPVLRITAVVPEE--YAVESRLIKENLFQFAQELKIEFRIEF 381
                        ********************************************766667***********66..99999********************** PP

               GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfds 270
                        ++  ++e l++++ ++  gE++aVn++ +++r l  + +++     +   ++++sP+vvv+v+ e  +d +++sF + f++ le+y+a+++s
  GSVIVT01019006001 382 VLIPTFEVLSFKAVKFIDGEKTAVNISPAIFRRLGTTNNIAG----FFCDLRRISPQVVVFVDGEgwTDSGATSFNRNFINGLEFYTAMLES 469
                        **********************************55555555....*******************66677999******************* PP

               GRAS 271 l.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                        l + ++++  ++ +k+E  l++++i  +v   g++       +  Wre ++ aG+++v+ s++a++qa++ll k +++g++v +++++++l+
  GSVIVT01019006001 470 LdAGGAGAGGDWVRKIEMSLIQPKIFAAVGDVGRR-------VTAWRELFSGAGLGQVQWSQFAESQAECLLGKSQVRGFHVAKRQAEMLLC 554
                        *555666667***********************98.......889*********************************************** PP

               GRAS 362 WkdrpLvsvSaWr 374
                        W+++pLv++SaWr
  GSVIVT01019006001 555 WHGKPLVATSAWR 567
                        ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.232180547IPR005202Transcription factor GRAS
PfamPF035141.8E-92207567IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MCAGSGRVEC DLSIGSLPLL FFFLFLAFPL AMKVPVPAQN NHSPNPKPLS CNNTTRNTAF  60
RSPATDTINV CYEPTSVLDL RRSPSPVADK AATFPGITAV SDVSLPLSEE PGFQWEDHGM  120
HNLDDWDPTV WDFVLRDDSA PVFGSVPQLG PCDPQFPHLP LPDLPPSQPI YHTQLLPFDF  180
TLSEISSNQN HNFNLNSFHW NVGSEFVEEL IRAAECFGSN NSQLAQAILA RLNQRLRAPV  240
GKPLQRAAFY FKEALHSLLT GSNRKSHSSA SEIVQTIKAY KAFSMISPIA MFSNFTASQA  300
LLEAVDGSLF IHIIDFDIGL GGQYASFMKE IADRSEACKV NPPVLRITAV VPEEYAVESR  360
LIKENLFQFA QELKIEFRIE FVLIPTFEVL SFKAVKFIDG EKTAVNISPA IFRRLGTTNN  420
IAGFFCDLRR ISPQVVVFVD GEGWTDSGAT SFNRNFINGL EFYTAMLESL DAGGAGAGGD  480
WVRKIEMSLI QPKIFAAVGD VGRRVTAWRE LFSGAGLGQV QWSQFAESQA ECLLGKSQVR  540
GFHVAKRQAE MLLCWHGKPL VATSAWRWFA CNSILV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2524156737375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.6470.0flower| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3963080.0FQ396308.1 Vitis vinifera clone SS0AFA10YI14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268445.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-147SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A438GIG60.0A0A438GIG6_VITVI; Scarecrow-like protein 15
TrEMBLF6GWY60.0F6GWY6_VITVI; Uncharacterized protein
STRINGVIT_04s0023g01380.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10323610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-148GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]