PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018942001
Common NameLOC100240994, VIT_04s0023g01930
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 367aa    MW: 40643.6 Da    PI: 5.8619
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018942001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66e-10200247455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  GSVIVT01018942001 200 SHSLAERARREKISKKMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 247
                        8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-16194264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-9194251No hitNo description
PROSITE profilePS5088815.104196246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16196263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7200247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-9202252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MLHCLRSPED FAAIGRPETM KWLHQPQKFQ QPSFHSKSFG FSQSSQIDDL NSVLREIPNR  60
SMKAENSWDN GLPGLGDFPT AGTDFRGHGM GFELPEIAGS SLEMDHSISR TSSCPLPDLG  120
AATSVDGREL AGRNSVKKRK AEVALTEECK DQKIKRDEEE EESKIEEKHS EISPNASKVS  180
GSPKPDYIHV RARRGQATDS HSLAERARRE KISKKMKYLQ DLVPGCNKIT GKAGMLDEII  240
NYVQSLQRQV EFLSLKLATM NPRTDFNLDT FLGKEFPAYV AAGFPTAAAS SEMANLPFLQ  300
FQPVPQGITS CELHMPIDPP QSALQMTTSS STSVPEMFTN STSFSQVQPF TTWDTDLQSL  360
YTGEFQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4674370.0AM467437.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X012132.9, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002266502.20.0PREDICTED: transcription factor HBI1
TrEMBLD7SPC40.0D7SPC4_VITVI; Uncharacterized protein
STRINGVIT_04s0023g01930.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.24e-54bHLH family protein