PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01018745001

Common Name

VIT_04s0023g03710

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

MYB

Protein Properties

Length: 243aa MW: 27285 Da PI: 8.2193

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01018745001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++ +G g+W++ ++ g+ R++k+c++rw +yl GSVIVT01018745001 14 KGAWTKEEDDRLIAHIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	59.1	9.8e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ GSVIVT01018745001 67 RGNFTDEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.1E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.769	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.26E-29	13	108	IPR009057	Homeodomain-like
SMART	SM00717	4.9E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.62E-9	16	61	No hit	No description
PROSITE profile	PS51294	29.017	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.6E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	3.73E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDDRLIAHIQ AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TDEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLSRG 120 IDPLTHRPIN EAAVDVATVS FGGVLKKEEV MSSGFGCKSR NPDEENCPDL NLELRISPPH 180 HHPSPPVLDS RERRMLCFYC SLGLEKSKEC SCSSGSGNGS SDDFLGMNNG VLDYRNLEMK 240 RD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	7e-31	13	116	26	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ792820	0.0	FJ792820.1 Vitis vinifera cultivar Cabernet Sauvignon R2R3 Myb4b C2 repressor motif protein (MYB4b) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001267938.1	1e-178	R2R3 MYB 4b transcription factor
Swissprot	P81393	1e-110	MYB08_ANTMA; Myb-related protein 308
TrEMBL	D7SNW8	1e-178	D7SNW8_VITVI; Uncharacterized protein
STRING	VIT_04s0023g03710.t01	1e-178	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	7e-94	myb domain protein 4

Link Out ? help Back to Top
Phytozome	GSVIVT01018745001

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]