PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018577001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 275aa    MW: 31428.7 Da    PI: 5.5998
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018577001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.48.9e-151461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++lv  +   G  +W++ ++  g++R++k+c++rw +yl
  GSVIVT01018577001 14 KGPWTAEEDKKLVTFILTNGHCCWRALPKLAGLRRCGKSCRLRWTNYL 61
                       79********************************************97 PP
2Myb_DNA-binding50.83.9e-1672111647
                        HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        + E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
  GSVIVT01018577001  72 EAEEQLVIDLHARLGNR-WSKIAAKLP-GRTDNEIKNHWNTH 111
                        67***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-20562IPR009057Homeodomain-like
PROSITE profilePS5129412.525961IPR017930Myb domain
SuperFamilySSF466892.45E-2611108IPR009057Homeodomain-like
SMARTSM007171.5E-111363IPR001005SANT/Myb domain
PfamPF002492.5E-131461IPR001005SANT/Myb domain
CDDcd001673.67E-81661No hitNo description
PROSITE profilePS5129426.64262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-2463117IPR009057Homeodomain-like
SMARTSM007172.1E-1466114IPR001005SANT/Myb domain
CDDcd001679.71E-1171112No hitNo description
PfamPF002493.4E-1472111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDKKLVTFIL TNGHCCWRAL PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL NEAEEQLVID LHARLGNRWS KIAAKLPGRT DNEIKNHWNT HIKKKLIKMG  120
IDPVTHEPLH EHVTPPEMPT LVDTEHQELS KTNDNLITSD ANSSSTLENN STDEHRPLGP  180
ASEDDPLMMS YIWSDEFLSN VSWSFLAQGE ECSELGFSST TPSEDGSSWW LDYEDFMNED  240
FGFNCLNEIP KLVSAVLVYI SSRLFFFFFI YIYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27141167108B-MYB
1gv2_A4e-27141164105MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-27141164105C-Myb DNA-Binding Domain
1msf_C4e-27141164105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.164730.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in mature flowers and decreases upon pollination. {ECO:0000269|PubMed:15805488}.
UniprotTISSUE SPECIFICITY: Restricted to the petals, with the highest expression in the limb. {ECO:0000269|PubMed:15805488}.
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4406490.0AM440649.1 Vitis vinifera contig VV78X116806.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002266019.20.0PREDICTED: protein ODORANT1
SwissprotQ50EX65e-95ODO1_PETHY; Protein ODORANT1
TrEMBLF6HAS00.0F6HAS0_VITVI; Uncharacterized protein
STRINGVIT_16s0022g01210.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.11e-95myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]