PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018446001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MIKC_MADS
Protein Properties Length: 204aa    MW: 23426.5 Da    PI: 5.5271
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018446001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.31.3e-30352251
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       rien + rqvtfskRrng+lKKA+ELSvLCdaevaviifs++g+lye+ss
  GSVIVT01018446001  3 RIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS 52
                       8***********************************************96 PP
2K-box70.26.7e-2473163897
              K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                        +   e+ +++l+q+++ + k+ie L+ +qR+llG++L+s+sl e+ ++ +qLekslk+iR++K +++ eqieel+++ek+l een +L++k
  GSVIVT01018446001  73 NpELEQYMQNLKQDAESMAKKIELLEVSQRKLLGQGLSSCSLDEILEIDSQLEKSLKSIRARKAQIFQEQIEELKEREKQLLEENARLSQK 163
                        33678899*********************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.29E-29168IPR002100Transcription factor, MADS-box
CDDcd002652.14E-37165No hitNo description
SMARTSM004323.4E-32153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.1154IPR002100Transcription factor, MADS-box
PfamPF003192.6E-27350IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-181631IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-183152IPR002100Transcription factor, MADS-box
PfamPF014862.5E-2380163IPR002487Transcription factor, K-box
PROSITE profilePS5129714.98380176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009838Biological Processabscission
GO:0009909Biological Processregulation of flower development
GO:0010150Biological Processleaf senescence
GO:0080187Biological Processfloral organ senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MRRIENATSR QVTFSKRRNG LLKKAYELSV LCDAEVAVII FSQKGRLYEF SSSNMQSAIE  60
RYREHAKQVE TNNPELEQYM QNLKQDAESM AKKIELLEVS QRKLLGQGLS SCSLDEILEI  120
DSQLEKSLKS IRARKAQIFQ EQIEELKERE KQLLEENARL SQKDTRQWQL SAQPSEGVTY  180
SQSSPSSEVE TELFIGLPEM RCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-183771086Myocyte-specific enhancer factor 2B
1tqe_Q2e-183771086Myocyte-specific enhancer factor 2B
1tqe_R2e-183771086Myocyte-specific enhancer factor 2B
1tqe_S2e-183771086Myocyte-specific enhancer factor 2B
6c9l_A2e-183771086Myocyte-specific enhancer factor 2B
6c9l_B2e-183771086Myocyte-specific enhancer factor 2B
6c9l_C2e-183771086Myocyte-specific enhancer factor 2B
6c9l_D2e-183771086Myocyte-specific enhancer factor 2B
6c9l_E2e-183771086Myocyte-specific enhancer factor 2B
6c9l_F2e-183771086Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.163781e-135bud| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
UniprotTISSUE SPECIFICITY: Expressed in quiescent center (QC) cells of root tips (PubMed:18162590, PubMed:21689171). Expressed at the base of the petiole of cotyledons and leaves, in flower buds, petals, sepals and abscission zone of flowers and siliques. {ECO:0000269|PubMed:18162590, ECO:0000269|PubMed:21689171}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00576DAPTransfer from AT5G62165Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4516515e-84AM451651.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X037174.6, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010662337.11e-145PREDICTED: MADS-box protein AGL42
RefseqXP_010662338.11e-145PREDICTED: MADS-box protein AGL42
RefseqXP_010662341.11e-145PREDICTED: MADS-box protein AGL42
RefseqXP_010662342.11e-145PREDICTED: MADS-box protein AGL42
SwissprotQ9FIS11e-83AGL42_ARATH; MADS-box protein AGL42
TrEMBLF6HAQ21e-99F6HAQ2_VITVI; Uncharacterized protein
STRINGVIT_16s0022g02380.t011e-100(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.35e-75AGAMOUS-like 42