PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018271001
Common NameLOC100253112, VIT_15s0021g01600
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 206aa    MW: 22435 Da    PI: 6.8171
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018271001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-1982132255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ tae+Aa a+++a+ +++g
  GSVIVT01018271001  82 RYRGVRRRP-WGKYAAEIRDPAKNG--ARVWLGTYETAEDAALAYDRAAFRIRG 132
                        7********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-2382142IPR016177DNA-binding domain
PROSITE profilePS5103224.81682140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-3182140IPR001471AP2/ERF domain
PfamPF008472.4E-1382132IPR001471AP2/ERF domain
SMARTSM003806.6E-3782146IPR001471AP2/ERF domain
PRINTSPR003678.5E-118394IPR001471AP2/ERF domain
CDDcd000184.22E-2490140No hitNo description
PRINTSPR003678.5E-11106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MYGHTTFDSD VAFLESVRSY LLEDSVLPHP FSANAPAYSA TTPTFTENRE NQPVLDAAAA  60
SGVVGEAKAE PQEAAGPEKL RRYRGVRRRP WGKYAAEIRD PAKNGARVWL GTYETAEDAA  120
LAYDRAAFRI RGSRAILNFP LRIGSGDPEP VRITTKRRSP QPSLSAAAAA ALKRTKGDVE  180
STAEMEAATE NVEDVFQLHQ LWVNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-3779147270ATERF1
3gcc_A6e-3779147270ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4281460.0AM428146.2 Vitis vinifera contig VV78X272943.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271494.11e-148PREDICTED: ethylene-responsive transcription factor 2
TrEMBLD7SLY21e-147D7SLY2_VITVI; Uncharacterized protein
STRINGVIT_15s0021g01600.t011e-148(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.15e-30ethylene responsive element binding factor 2