PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSVIVT01018205001 | ||||||||
Common Name | LOC100246212, VIT_15s0021g02290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 405aa MW: 44853.5 Da PI: 7.5006 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130 | 8.5e-41 | 161 | 238 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrhkvCe+hskap+v+v gleqrfCqqCsrfh++sefD++krsCrrrLa+hnerrrk+++ GSVIVT01018205001 161 RCQVEGCHVALVNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHAVSEFDDSKRSCRRRLAGHNERRRKSSH 238 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.9E-35 | 156 | 223 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.513 | 159 | 236 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.83E-38 | 160 | 241 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.1E-32 | 162 | 235 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 405 aa Download sequence Send to blast |
MENGGNSFNG NRGQNGNSGS HLAWDVRDLG ASRFDWNCTG NSFNDDAATA TATDAPTQPE 60 AGVGHALMFP HQATADVHHN QYYHQHNHHH HHQQSLYGGD GSHLHPDPHL MCLKLGKRHY 120 FEDSTPGIST DKRGRPYYSG GSSQSSATAV SVVGSPATVP RCQVEGCHVA LVNAKDYHRR 180 HKVCEMHSKA PKVVVLGLEQ RFCQQCSRFH AVSEFDDSKR SCRRRLAGHN ERRRKSSHDS 240 VARNPSQAAN KLMTGRFAYL SSPTGRALSL LSSKSDSWVS SAELSLRSSA ALRELIAENR 300 AAILARQLIL DRDWHWHHHG MEDSGGEQPG SDSLMPHQHQ MFPGSRSWER FHEANGHVTL 360 DLMQAPSSAF GLLSVREKSK EEEEECSELW NSLEGTHVLP NTFI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-29 | 162 | 235 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Vvi.5867 | 0.0 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM466800 | 0.0 | AM466800.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X004301.10, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010661347.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 7 isoform X1 | ||||
TrEMBL | F6GV74 | 0.0 | F6GV74_VITVI; Uncharacterized protein | ||||
STRING | VIT_15s0021g02290.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43270.3 | 2e-36 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GSVIVT01018205001 |
Entrez Gene | 100246212 |