PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01018204001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | SBP | ||||||||
Protein Properties | Length: 389aa MW: 43512.6 Da PI: 8.418 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.4 | 6.3e-41 | 236 | 313 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+ GSVIVT01018204001 236 RCQAEGCNADLTHAKHYHRRHKVCEFHSKASTVFAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQ 313 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.2E-34 | 232 | 298 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.24 | 234 | 311 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.8E-38 | 235 | 314 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.3E-30 | 237 | 310 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MEKLGHKGGV RWKSELLGPG KETFSVFTNF HNGEGDKMVN LVFELLGGQQ VLLVSLCLFT 60 RFHAAIDRVE GLWNNVVKPE LQWEMLDYEW GNPSPIMLSG DEPPQDSDQT RQIFDHYHQT 120 FTDGLVAPAT AFFHHQSQPQ PAHIHSLYDP RAYHTYQAPP PAMLSLEPVA GTSAGGGTGF 180 MVVPKSEEMV PAADFTARIG LNLGGRTYFS SEDDFVNRLY QRRSRPAEPG LTNSPRCQAE 240 GCNADLTHAK HYHRRHKVCE FHSKASTVFA AGLTQRFCQQ CSRFHLLSEF DNGKRSCRKR 300 LADHNRRRRK SQQPIQDNHK LHQHHLENAR NSSSDNITRS PPDSGAHSSS SVTVAVSPPR 360 MTLDCFRQRP YQTTASSASS SSLFFPSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-31 | 237 | 310 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.17573 | 0.0 | flower| inflorescence| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during plant development. During pollen development, required for crosporogenesis that leads to archesporial formation and for the histogenesis of the microsporangia. During ovules development, involved in the transition to meiosis of the megaspore mother cells. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:12671094}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot apical region and early floral tissues. Transcripts levels increase in developing pollen sacs, and decrease in later stage of anther development. Strongly expressed in the placental region of the carpels. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:17093870}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00090 | SELEX | Transfer from AT1G02065 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ380590 | 0.0 | FQ380590.1 Vitis vinifera clone SS0ACG47YM12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003633906.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 8 | ||||
Refseq | XP_010661346.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 8 | ||||
Swissprot | Q8GXL3 | 2e-81 | SPL8_ARATH; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | F6GV73 | 0.0 | F6GV73_VITVI; Uncharacterized protein | ||||
STRING | VIT_15s0021g02300.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 3e-80 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01018204001 |
Publications ? help Back to Top | |||
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