PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018180001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GATA
Protein Properties Length: 256aa    MW: 28404.3 Da    PI: 6.3047
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018180001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.7e-18157191135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  GSVIVT01018180001 157 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 191
                        *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.4E-772248IPR016679Transcription factor, GATA, plant
SMARTSM004012.4E-14151201IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.899151187IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.47E-14155215No hitNo description
Gene3DG3DSA:3.30.50.101.2E-13155189IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.58E-14156203No hitNo description
PfamPF003206.7E-16157191IPR000679Zinc finger, GATA-type
PROSITE patternPS003440157182IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDLYGLQTSD FFRIDDLLDF TNDELFSSTT TDSGNLPPPE IASGNRSLAA SGNRDQPNTF  60
HSADFTDDLC VPSDDVAELE WLSNFVDDSF ADFPENELAG TVMARPDSSF PGRTRSKRSR  120
ASSTNKVWTS SSSSSVISGE RSSSSSPASS PTGARKCTHC ASEKTPQWRT GPLGPKTLCN  180
ACGVRYKSGR LVPEYRPAAS PTFVLTQHSN SHRKVMELRR QKEILRQQQQ QQQLYHHHHD  240
FEEVSLNFLF FALML*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117RTRSKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.127410.0bud| flower| fruit| inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in flowers and leaves, and to a lower extent in stems. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4357420.0AM435742.2 Vitis vinifera contig VV78X216764.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277959.11e-156PREDICTED: GATA transcription factor 4
SwissprotO497411e-76GATA2_ARATH; GATA transcription factor 2
TrEMBLF6GV651e-154F6GV65_VITVI; GATA transcription factor
STRINGVIT_15s0021g02510.t011e-155(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-67GATA transcription factor 4
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]