PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01017716001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 313aa    MW: 35439.6 Da    PI: 7.8945
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01017716001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.9e-181461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg W++eEde+l ++++++G g+W+++++  g+ R++k+c++rw +yl
  GSVIVT01017716001 14 RGLWSPEEDEKLFRYITEHGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61
                       788*******************************************97 PP
2Myb_DNA-binding49.97.5e-1667109145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        rg++T +E++l+v++++ lG++ W+ Ia++++ gRt++++k+ w+
  GSVIVT01017716001  67 RGAFTGQEEKLIVELHEILGNR-WSQIASHLP-GRTDNEIKNQWN 109
                        899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-27664IPR009057Homeodomain-like
PROSITE profilePS5129425.093965IPR017930Myb domain
SuperFamilySSF466897.11E-3011108IPR009057Homeodomain-like
SMARTSM007171.3E-131363IPR001005SANT/Myb domain
PfamPF002495.9E-161461IPR001005SANT/Myb domain
CDDcd001671.73E-111761No hitNo description
Gene3DG3DSA:1.10.10.609.2E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129418.64466116IPR017930Myb domain
SMARTSM007178.7E-1666114IPR001005SANT/Myb domain
PfamPF002492.8E-1467110IPR001005SANT/Myb domain
CDDcd001676.95E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGKHSCCYKQ KLKRGLWSPE EDEKLFRYIT EHGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGAF TGQEEKLIVE LHEILGNRWS QIASHLPGRT DNEIKNQWNS SIKKKLRQKG  120
IDPNTHKPLS EIDNRPTANN SSMELELELE PLLNNEESLT TIFCRPGEVT GRLNYESNPH  180
FPFDLHPGSW LSQNSISSQL NSQFHSTSIS TFLQTDFSST GSVLPLQSPR GIQYASASSS  240
SSQFSWGLAD WGLSDQEGKL GDNKQLEHLS TPSFSNWNKN CFSDYKCFCL YRSHACPSYC  300
IGYDQIQIQG NG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.140710.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed specifically in guard cells (PubMed:16005292). Expressed in sink tissues, such as xylem, roots and developing seeds (PubMed:22708996). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:22708996}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4587960.0AM458796.2 Vitis vinifera contig VV78X241197.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275594.10.0PREDICTED: transcription factor MYB86
SwissprotQ8VZQ22e-81MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A438KL160.0A0A438KL16_VITVI; Transcription factor MYB61
TrEMBLF6HE540.0F6HE54_VITVI; Uncharacterized protein
STRINGVIT_05s0020g01100.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.14e-82myb domain protein 61
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]