PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01017678001
Common NameLOC100252756, VIT_05s0020g00700
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family SBP
Protein Properties Length: 981aa    MW: 109547 Da    PI: 7.7865
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01017678001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.52.5e-40124201178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cqve+C+adl +ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  GSVIVT01017678001 124 VCQVEDCRADLGNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNRRRRKTHP 201
                        6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-32120186IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.923122199IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.29E-38123205IPR004333Transcription factor, SBP-box
PfamPF031101.7E-28125198IPR004333Transcription factor, SBP-box
SuperFamilySSF484032.07E-7749864IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.6E-7752865IPR020683Ankyrin repeat-containing domain
CDDcd002047.53E-8753863No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 981 aa     Download sequence    Send to blast
MEHKFGGKAN HLRGPTVSDL KKLGKRTLEW DLNGWKWDGD LFRATQLNSV PSDCGSKQFF  60
PPASEPVTRE LEKKRRVVVL EDEACDELGS LNLKLGAQVY PIMEGEVKSG KKTKLIGATP  120
NRAVCQVEDC RADLGNAKDY HRRHKVCDMH SKASKALVGN VMQRFCQQCS RFHLLQEFDE  180
GKRSCRRRLA GHNRRRRKTH PDTVVNGGSL NDERGIRYLL MSVLRILSNM HANSSDQTKD  240
QDLLSHILKN LASSGGTINE RDIPGLLQGS QDLLNAGTSV GTAEKASSRP IGPCLMATVP  300
EMAEKRVFTD DAQVGMLQNL SGTQPTNRFP TGDGVPAMEN MQGTTHGRIK LNNFDLNNVY  360
NDSQDCIENP ERSYGPANPG TRPLDRALLV QQDSYKSSPP QTSANSDSTS ARSLSTSSGE  420
AQSRTDRIVF KLFGKDPSDF PLVMRKQVLD WLSHTPTEIE SFIRPGCIIL TIYLRLGKST  480
WEELCCDLGS SLSRLLDMSE DSFWRTGWVY TRVQNRLAFI YSGQVVLDTP LPFKSHNCRI  540
SSIKPIAVPV SEQAQFVVKG FNLAGSATRL LCALEGRYLV QETCYELTEG TDTFIEHDDL  600
QCLSFPCSVP NISGRGFIEV EDHGLNSSFF PFIVAEQDVC SEICMLEGVI DMVETAEDIL  660
RETGKMQAKY QALDFIHEMG WLLHRNYLKF RLGDMDPNLD LFPFKRFKCL MEFSVDHDWC  720
AVVKKLLGIV FSGTVNAGEH PSIEIALLDM CLLHSAVRRN CRPMVELLLR FIPDKILDKS  780
GSNDKRWPNS GSNYLFKPDF VGPAGLTPLH IAASMDGSEN VLDALTDDPE LVGIEAWKSA  840
RDKVGSTPND YACLRGHNSY IQLVQKKINN KLNRRVVLDI PDAPLDCNTK PKPSDGLKSV  900
RVPSLQIEKQ AARQHCKLCE QKLAYGDTRM RTSLAYRPAM LSMVAIAAVC VCVALLFKSS  960
PEVLYVFRPF RWELLKYGSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-291241981084squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.35130.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX8452470.0JX845247.1 Vitis pseudoreticulata squamosa promoter binding protein 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274934.10.0PREDICTED: squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLF6HE380.0F6HE38_VITVI; Uncharacterized protein
STRINGVIT_05s0020g00700.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25951432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]