PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01017670001
Common NameLOC100240779, VIT_05s0020g00630
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family CAMTA
Protein Properties Length: 1019aa    MW: 113012 Da    PI: 6.9007
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01017670001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.57.2e-55201352117
               CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                        l+ ++rwl+++ei++iL n++k+ +t +++ +p+ gsl+L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK g+v+vl+cyYah+e+n++
  GSVIVT01017670001  20 LEAQHRWLRPTEICEILRNYQKFLITPDPPVTPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEDNEN 111
                        5679**************************************************************************************** PP

               CG-1  94 fqrrcywlLeeelekivlvhylev 117
                        fqrr+yw+L+e+le+ivlvhy+e 
  GSVIVT01017670001 112 FQRRSYWMLDEQLEHIVLVHYREI 135
                        *********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.45515141IPR005559CG-1 DNA-binding domain
SMARTSM010768.5E-7718136IPR005559CG-1 DNA-binding domain
PfamPF038591.4E-4921134IPR005559CG-1 DNA-binding domain
SuperFamilySSF812962.27E-19446533IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.101.9E-6446538IPR013783Immunoglobulin-like fold
PfamPF018331.1E-5446532IPR002909IPT domain
SuperFamilySSF484031.61E-13642744IPR020683Ankyrin repeat-containing domain
CDDcd002043.02E-11643741No hitNo description
Gene3DG3DSA:1.25.40.207.8E-14643746IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.91649743IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.618682714IPR002110Ankyrin repeat
SMARTSM002480.016682711IPR002110Ankyrin repeat
SMARTSM00248620721750IPR002110Ankyrin repeat
SMARTSM00015370799823IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.31E-8849904IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000153.7853875IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.334854883IPR000048IQ motif, EF-hand binding site
PfamPF006120.071855874IPR000048IQ motif, EF-hand binding site
SMARTSM000155.2E-4876898IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.542877901IPR000048IQ motif, EF-hand binding site
PfamPF006128.9E-5879898IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.144958986IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1019 aa     Download sequence    Send to blast
MAESRRYVPN QQLDLEQILL EAQHRWLRPT EICEILRNYQ KFLITPDPPV TPPAGSLFLF  60
DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDNE NFQRRSYWML  120
DEQLEHIVLV HYREIKEGYK TSTSVPRLPN AVPASQIGTI QGSSAPCLSQ GNAPTVTGQI  180
SYASSPNTAD WSGQTLSSEF EDGDSGDDPG TSSLAQPILG SVFYNASLPT HEASGFAGLS  240
RNQLGSGLAG VHFSHGASTS VQDEIHGSSS SVHDQKFGFE QPNGADFITN KLTDARLDSD  300
RTVQNFAARG DGLSPALDIK GLTAASQRAV QGPLEHNFHL VHPQFQNCSS SHVADTSTAH  360
IENKSKEDGA NNDASGELKK LDSFGRWMDK EIGGDCDDSL MASDSGNYWN TLDTQNDDKE  420
VSSLSRHMQL DIDSLAPSLS QEQLFTINDF SPDWAYSEDE TKVLIIGTFL GGMEHSTNTK  480
WCCMFGEIEV SAEVLTNNVI RCHAPLHAPG RVPFYVTCSN RLACSEVREF EYREKPSRVA  540
FSMAVRSTPE DDVQFQIQLA KMLHLGQERK WLDCSIEECD KCKIKSDIYS KKDDIKNDWE  600
ELEMAKDFIG NHVNPRDVLI KNLLKDRLFE WLVCKVHEGV RGPHVLDGKG QGVIHLAAAL  660
GYEWAMGPII VAGVSPNFRD ARGRTGLHWA SYFGREETVI ALVKLGTSPD AVEDPTPAFP  720
GGQTAADLAS SRGHKGIAGY LAEAHLSSHL CSLSPSENVM DSVSANIAAE KAAQTAVQNV  780
DGVIEEQLSL KGSLAALRKS AHAAALIQAA LRARSFRDRR LTRSNDDISE ASLDLVALGS  840
LNKVSKMGHF KDYLHSAAVK IQQKYRGWKG REDFLKIRSR IVKIQAHVRG HQVRKQYKKV  900
VWSVGIVEKA ILRWRRKGSG LRGFRLEKPI GNAVPEVGKT DEYDYLRVGR RQKFAGVEKA  960
LARVQSMVRH PEARDQYMRL VSKFDNLQIG DEGSSALQQA EKSEKLIKEE DLGSFIAD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.163490.0bud| cell culture
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4826960.0AM482696.2 Vitis vinifera contig VV78X063512.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274846.10.0PREDICTED: calmodulin-binding transcription activator 3 isoform X1
RefseqXP_010649672.10.0PREDICTED: calmodulin-binding transcription activator 3 isoform X1
RefseqXP_010649674.10.0PREDICTED: calmodulin-binding transcription activator 3 isoform X1
TrEMBLD7T6770.0D7T677_VITVI; Uncharacterized protein
STRINGVIT_05s0020g00630.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1