PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01017572001
Common NameLOC100255943, VIT_09s0002g09140, VITISV_001270
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 145aa    MW: 16395.4 Da    PI: 7.0565
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01017572001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.1e-19755254
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                       +y+GVr+++ +g+Wv+eIr+p     +  +r++lg+f tae+Aa+a+++a++ + 
  GSVIVT01017572001  7 RYRGVRQRH-WGSWVSEIRHP-----QlkTRIWLGTFETAEDAARAYDEAARLMC 55
                       69******9.**********9.....445**********************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.31E-32663No hitNo description
Gene3DG3DSA:3.30.730.105.9E-34764IPR001471AP2/ERF domain
SMARTSM003809.6E-41770IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-21765IPR016177DNA-binding domain
PfamPF008472.5E-12756IPR001471AP2/ERF domain
PROSITE profilePS5103220.837764IPR001471AP2/ERF domain
PRINTSPR003672.1E-11819IPR001471AP2/ERF domain
PRINTSPR003672.1E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MAGQQQRYRG VRQRHWGSWV SEIRHPQLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR  60
TNFTYNSDDS QSSSSKLLSA TLTAKLQRCY MASPQGAKIP LATDFQQPHY SPNFGTEFKV  120
LEDDHIEQMI EELLHSGSIE LGFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-16463262ATERF1
3gcc_A2e-16463262ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.302561e-133bud
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4244401e-145AM424440.2 Vitis vinifera contig VV78X250797.21, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274284.14e-99PREDICTED: ethylene-responsive transcription factor ERF003
SwissprotQ94AW51e-62ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A438CHH69e-98A0A438CHH6_VITVI; Ethylene-responsive transcription factor ERF003
TrEMBLA0A438I4A58e-98A0A438I4A5_VITVI; Ethylene-responsive transcription factor ERF003
TrEMBLA5AEC69e-98A5AEC6_VITVI; Uncharacterized protein
STRINGVIT_09s0002g09140.t011e-98(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-33ERF family protein
Publications ? help Back to Top
  1. Velasco R, et al.
    A high quality draft consensus sequence of the genome of a heterozygous grapevine variety.
    PLoS ONE, 2007. 2(12): p. e1326
    [PMID:18094749]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]