PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01017571001 | ||||||||
Common Name | LOC100261023, VIT_09s0002g09120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 176aa MW: 19791.1 Da PI: 9.1246 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 8 | 56 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 +y+GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a+++a++ + GSVIVT01017571001 8 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 56 69******9.**********8.....334**********************8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.01E-31 | 7 | 64 | No hit | No description |
PROSITE profile | PS51032 | 20.719 | 8 | 65 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.4E-41 | 8 | 71 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-33 | 8 | 65 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-11 | 8 | 57 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 8 | 66 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.7E-11 | 9 | 20 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 31 | 47 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MAGKQQQRYR GVRQRHWGSW VSEIRHPLLK TRIWLGTFET AEDAARAYDE AARLMCGPRA 60 RTNFSYNPND SQSSSSRLLS ATLTAKLHRC YMASLQAAKE PLATHLQQPH YSPNFATDGN 120 AGNSRQVDVG SPAKRRRQVQ GKRVGGEDEE FKVLEDDHIE QMIEELLHSG SVELN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-16 | 9 | 72 | 6 | 70 | ATERF1 |
3gcc_A | 2e-16 | 9 | 72 | 6 | 70 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.14968 | 0.0 | stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM462723 | 0.0 | AM462723.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X236602.19, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002274216.1 | 1e-130 | PREDICTED: ethylene-responsive transcription factor ERF003 | ||||
Swissprot | Q94AW5 | 2e-69 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | D7TZG9 | 1e-129 | D7TZG9_VITVI; Uncharacterized protein | ||||
STRING | VIT_09s0002g09120.t01 | 1e-129 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 5e-49 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01017571001 |
Entrez Gene | 100261023 |
Publications ? help Back to Top | |||
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