PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01017542001
Common NameLOC100250926, VIT_09s0002g08830
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 276aa    MW: 29692.6 Da    PI: 10.4367
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01017542001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.8e-20132181255
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g
  GSVIVT01017542001 132 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRG 181
                        69*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.83E-16131190No hitNo description
PROSITE profilePS5103222.866132189IPR001471AP2/ERF domain
PfamPF008472.5E-14132181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-29132189IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22132189IPR016177DNA-binding domain
SMARTSM003803.3E-33132195IPR001471AP2/ERF domain
PRINTSPR003671.1E-10133144IPR001471AP2/ERF domain
PRINTSPR003671.1E-10155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MCLSSQHNNS GKTMDREALR AVTFFPKPES FEVHETLRYL SETAPFYGSL LGAHFSLSSV  60
SVPELVNLPS NGAVLADLSG NLGDGTQKEA EIPPVLDGIA AVVGQHVLFG GKKSGSSLVD  120
KKNIGDVSVQ KSYRGVRKRP WGRWSAEIRD RIGRCRHWLG TFDTAEEAAR AYDAAARRLR  180
GSKARTNFEI PSVLPLSSPS SSSSSSEMKR NMSSKPKAQN RRKCSVVTSV AHLFSSSSIP  240
STTEVKGKVN VELDLKLGVN FSNRNAASVP LSPST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-17131190161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.188690.0fruit
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4406200.0AM440620.2 Vitis vinifera contig VV78X129833.13, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271298.11e-159PREDICTED: ethylene-responsive transcription factor ERF084
SwissprotQ9M8M51e-30ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A438I4E71e-166A0A438I4E7_VITVI; Ethylene-responsive transcription factor ERF084
STRINGVIT_09s0002g08830.t011e-158(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.12e-28ERF family protein