PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01017369001

Common Name

VITISV_031334

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

FAR1

Protein Properties

Length: 732aa MW: 84578.2 Da PI: 5.1025

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01017369001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.5	4e-22	112	195	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leHnH + GSVIVT01017369001 112 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAN-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHLF 195 69**************************************99888.....8999*****************************77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-19	112	195	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.6E-30	317	410	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.817	603	639	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.6E-6	614	641	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence Send to blast
MTDDSTFSPS DDPLSPNPNL EITMEEGSEN SEQLLDNEGN DLENECEQVL ENEGNDLDND 60 CEQVFEIEGN DHENVTDFDT RIVDGENGMS QGKNYLPPVV GMEFESYDDA YNYYNCYAKE 120 LGFAIRVKSS WTKRNSKEKR GAVLCCNCEG FKTIKEANSR RKETRTGCLA MIRLRLVESN 180 RWRVDEVKLE HNHLFDPERA QNSKSHKKMD AGAKRKVEPT LDVEVRTIKL YRTPALDAMS 240 YGNSSSSERE INNHTDQPKR LNLKKGDAQV IYNYFCRVQL TNPNFFYLMD LSDDGHLRNV 300 FWIDSRSRAA YGYFGDVVAF DTVCLSNKYE IPLLAFVGGN HHGQPVLLGC GLLADETPET 360 YIWLFRAWLT CMSGRPPQTI ITDQCKALQS AIAEVFPRAH HRLCLSHVMQ RILEKLGDLQ 420 ENEPFRTALN RTVYDSVKID EFELAWEDMI QRFGIRSHEC LRTLYEDRER WAPVYSKDTF 480 FAGLSTFQQG ESMSSFFNGY VHEQTSLKEF LDMYEFILQK GHQKEAVDDF ESRDSTPTLK 540 TRCFYELQLS NVYTKEIFEK FQGEIEMMSS CISITQLHVN GPIVTYIVKE REGDVNMREV 600 RNFEVMYDKA GAEVRCICSC FNFKGYLCRH AMCVLNYNGL EEIPLQYILS RWRKDFKRLY 660 IPDLGSNNVD ITNPVQWFDH LYRRALQVVE EGMTSQDHYM VAWQAFKESL NKVRLAADKH 720 GKLCFGPGPK N*

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence Send to blast

MTDDSTFSPS DDPLSPNPNL EITMEEGSEN SEQLLDNEGN DLENECEQVL ENEGNDLDND  60
CEQVFEIEGN DHENVTDFDT RIVDGENGMS QGKNYLPPVV GMEFESYDDA YNYYNCYAKE  120
LGFAIRVKSS WTKRNSKEKR GAVLCCNCEG FKTIKEANSR RKETRTGCLA MIRLRLVESN  180
RWRVDEVKLE HNHLFDPERA QNSKSHKKMD AGAKRKVEPT LDVEVRTIKL YRTPALDAMS  240
YGNSSSSERE INNHTDQPKR LNLKKGDAQV IYNYFCRVQL TNPNFFYLMD LSDDGHLRNV  300
FWIDSRSRAA YGYFGDVVAF DTVCLSNKYE IPLLAFVGGN HHGQPVLLGC GLLADETPET  360
YIWLFRAWLT CMSGRPPQTI ITDQCKALQS AIAEVFPRAH HRLCLSHVMQ RILEKLGDLQ  420
ENEPFRTALN RTVYDSVKID EFELAWEDMI QRFGIRSHEC LRTLYEDRER WAPVYSKDTF  480
FAGLSTFQQG ESMSSFFNGY VHEQTSLKEF LDMYEFILQK GHQKEAVDDF ESRDSTPTLK  540
TRCFYELQLS NVYTKEIFEK FQGEIEMMSS CISITQLHVN GPIVTYIVKE REGDVNMREV  600
RNFEVMYDKA GAEVRCICSC FNFKGYLCRH AMCVLNYNGL EEIPLQYILS RWRKDFKRLY  660
IPDLGSNNVD ITNPVQWFDH LYRRALQVVE EGMTSQDHYM VAWQAFKESL NKVRLAADKH  720
GKLCFGPGPK N*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM429223	0.0	AM429223.2 Vitis vinifera contig VV78X259035.12, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002263391.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8 isoform X2
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A438I5U7	0.0	A0A438I5U7_VITVI; Protein FAR1-related sequence 8
STRING	EMJ18225	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	GSVIVT01017369001

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]