PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01017242001
Common NameVIT_09s0002g06020
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family CPP
Protein Properties Length: 327aa    MW: 35792.7 Da    PI: 7.1982
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01017242001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.81.4e-151353242
                TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                       ++k+CnCk+++Clk+YC+C aag++C+++C C++C Nk+e+
  GSVIVT01017242001 13 DRKHCNCKRTQCLKLYCDCLAAGVYCTDSCACSNCLNKSEN 53
                       689***********************************985 PP
2TCR31.53.5e-10101122122
                TCR   1 kekkgCnCkkskClkkYCeCfa 22 
                        ++k+gCnCkks C+kkYCeC++
  GSVIVT01017242001 101 RHKRGCNCKKSMCQKKYCECYQ 122
                        589******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.5E-151253IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163425.95513143IPR005172CRC domain
PfamPF036381.2E-111550IPR005172CRC domain
SMARTSM011149.6E-4101131IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-5103122IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSRKTATHTT ESDRKHCNCK RTQCLKLYCD CLAAGVYCTD SCACSNCLNK SENEGVVQII  60
REKIESRDPL AFAPRIVNPD TDTTDNVLQE DGNWTTPSSA RHKRGCNCKK SMCQKKYCEC  120
YQVYISVDLN RRAERWGVQS HGELNMGGAD QFSPEWEGIT DINQITPLSH PHSGAGASSA  180
SPNPRDFPEV LHAELYRGNN SQTSAGALHW SSSSNTLVPL RHGNEAPQEL SSDSAQHALT  240
KDDDTPKILS SSPNGPMQAC SSNQKCVSPP QIQLKDTSLR PSPSLTNEQT IIRLGTPSVR  300
PFSWCSNSKD GIPQIKSHPN DSTSNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-111412511107Protein lin-54 homolog
5fd3_B2e-111412511107Protein lin-54 homolog
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4745060.0AM474506.1 Vitis vinifera contig VV78X239862.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654746.10.0PREDICTED: protein tesmin/TSO1-like CXC 3
TrEMBLD7U0W40.0D7U0W4_VITVI; Uncharacterized protein
STRINGVIT_09s0002g06020.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9931755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-39TESMIN/TSO1-like CXC 2